CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75228	Canola	plastid	97.69	95.48
AT4G32260.1	Thale cress	plastid	88.43	87.21
GSMUA_Achr8P22550_001	Banana	endoplasmic reticulum, vacuole	39.35	70.83
Solyc06g066000.1.1	Tomato	plastid	66.67	64.57
PGSC0003DMT400052777	Potato	plastid	66.67	64.57
VIT_04s0008g05590.t01	Wine grape	plastid	63.89	64.19
PGSC0003DMT400052738	Potato	plastid	66.2	64.13
Solyc06g065990.1.1	Tomato	nucleus, plastid	65.28	63.23
KRH61755	Soybean	plastid	60.65	60.93
KRH52420	Soybean	plastid	59.26	59.53
EER92459	Sorghum	plastid	52.78	53.27
TraesCS4A01G099800.1	Wheat	plastid	51.39	52.61
TraesCS4B01G204500.1	Wheat	golgi, plastid	51.39	52.61
TraesCS4D01G205400.1	Wheat	plastid	50.93	52.13
Os03t0278900-01	Rice	plastid	50.46	51.66
Zm00001d047789_P001	Maize	plastid	51.39	51.39
HORVU4Hr1G058970.6	Barley	plastid	50.93	46.81

Protein Annotations

MapMan:1.1.9.1.3	GO:A0A078BVH9	InterPro:ATP_synth_b'	InterPro:ATP_synth_b/b'su_bac/chlpt	EnsemblPlants:CDX68826	ProteinID:CDX68826
ProteinID:CDX68826.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0016020	GO:GO:0045263	EnsemblPlantsGene:GSBRNA2T00130546001
HAMAP:MF_01398	HAMAP:MF_01399	PFAM:PF00430	PANTHER:PTHR33445	TMHMM:TMhelix	UniParc:UPI0004EEE281
SEG:seg	:	:	:	:	:

Description

BnaC01g06270D

Coordinates

chrLK031789:+:1446551..1447673

Molecular Weight (calculated)

23438.6 Da

IEP (calculated)

7.000

GRAVY (calculated)

-0.003

Length

216 amino acids

Sequence
(BLAST)

001: MANSIMASSK PLISLSSSTQ PTRVNLPKSI KLPQIPKPIS SSLSSKALSF SSATVKSLAL IAALAPPSMA EAMEKAQLFD FNLTLPIIVV EFLFLMFALD
101: KVYYSPLGNF MDKRDGEIKE KLASVKDTSA EVKELDEQAA AVMRAARAEI AAALNKMKKE TQVEVEEQLA VGRKKVEAEL QEALASLEKQ KEETIKALDS
201: QIAALSEDIV KKVLPS

Best Arabidopsis Sequence Match ( AT4G32260.1 )
(BLAST)

001: MAANSIMASS KPLISLSSNQ QPNRVQIPKF AKLPQIPKSL TSSTDLRSKA LSLSSATAKS LALIAAFAPP SMAEAMEKAQ LFDFNLTLPI IVVEFLFLMF
101: ALDKVYYSPL GNFMDQRDAS IKEKLASVKD TSTEVKELDE QAAAVMRAAR AEIAAALNKM KKETQVEVEE KLAEGRKKVE EELKEALASL ESQKEETIKA
201: LDSQIAALSE DIVKKVLPS

Arabidopsis Description

PDE334 [Source:UniProtKB/TrEMBL;Acc:A0A178V017]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.