Factsheet for PGSC0003DMT400052738

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052777	Potato	plastid	97.76	97.76
Solyc06g065990.1.1	Tomato	nucleus, plastid	94.62	94.62
GSMUA_Achr8P22550_001	Banana	endoplasmic reticulum, vacuole	40.81	75.83
KRH61755	Soybean	plastid	64.57	66.98
KRH52420	Soybean	plastid	64.13	66.51
CDX68826	Canola	plastid	64.13	66.2
VIT_04s0008g05590.t01	Wine grape	plastid	63.23	65.58
Bra011329.1-P	Field mustard	plastid	64.13	64.71
CDX75228	Canola	plastid	64.13	64.71
AT4G32260.1	Thale cress	plastid	63.23	64.38
EER92459	Sorghum	plastid	54.71	57.01
TraesCS4B01G204500.1	Wheat	golgi, plastid	52.91	55.92
Os03t0278900-01	Rice	plastid	52.47	55.45
TraesCS4A01G099800.1	Wheat	plastid	52.47	55.45
TraesCS4D01G205400.1	Wheat	plastid	52.47	55.45
Zm00001d047789_P001	Maize	plastid	52.91	54.63
HORVU4Hr1G058970.6	Barley	plastid	52.47	49.79

Protein Annotations

MapMan:1.1.9.1.3	Gene3D:1.20.120.20	EntrezGene:102584644	InterPro:ATP_synth_b'	InterPro:ATP_synth_b/b'su_bac/chlpt	ncoils:Coil
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015078	GO:GO:0015986	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0045263
UniProt:M1BTW9	HAMAP:MF_01398	HAMAP:MF_01399	PFAM:PF00430	EnsemblPlantsGene:PGSC0003DMG400020466	PGSC:PGSC0003DMG400020466
EnsemblPlants:PGSC0003DMT400052738	PANTHER:PTHR33445	UniParc:UPI000295115A	RefSeq:XP_006353680.1	SEG:seg	:

Description

ATP synthase subunit b', chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400020466]

Coordinates

chr6:+:45750703..45751656

Molecular Weight (calculated)

24427.9 Da

IEP (calculated)

5.505

GRAVY (calculated)

-0.088

Length

223 amino acids

Sequence
(BLAST)

001: MANMMMSSSK ALITSSSSTI PPSPRFKLSL TQIPFPKLPL PKSPKTLETL SIPSTLKSIS VILASSLAMA PPSLAEEIEK ASLFDFNLTL PIMMAEFLFL
101: MFALDKIYFS PLGKFMDERD SSIKEKLSSV KDTSAEVKQL EDQAAAIMKA ARAEISAALN KMKKETQQEV EQKIAEGRKK VEAELQEALA SLESQKEETI
201: KSLDSQIAAL SDEIVKKVLP ATN

Best Arabidopsis Sequence Match ( AT4G32260.1 )
(BLAST)

001: MAANSIMASS KPLISLSSNQ QPNRVQIPKF AKLPQIPKSL TSSTDLRSKA LSLSSATAKS LALIAAFAPP SMAEAMEKAQ LFDFNLTLPI IVVEFLFLMF
101: ALDKVYYSPL GNFMDQRDAS IKEKLASVKD TSTEVKELDE QAAAVMRAAR AEIAAALNKM KKETQVEVEE KLAEGRKKVE EELKEALASL ESQKEETIKA
201: LDSQIAALSE DIVKKVLPS

Arabidopsis Description

PDE334 [Source:UniProtKB/TrEMBL;Acc:A0A178V017]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.