CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047789_P001	Maize	plastid	92.99	92.13
GSMUA_Achr8P22550_001	Banana	endoplasmic reticulum, vacuole	44.86	80.0
Os03t0278900-01	Rice	plastid	77.57	78.67
TraesCS4B01G204500.1	Wheat	golgi, plastid	77.1	78.2
TraesCS4D01G205400.1	Wheat	plastid	76.64	77.73
TraesCS4A01G099800.1	Wheat	plastid	75.7	76.78
HORVU4Hr1G058970.6	Barley	plastid	76.64	69.79
KRH52420	Soybean	plastid	57.48	57.21
KRH61755	Soybean	plastid	57.48	57.21
PGSC0003DMT400052738	Potato	plastid	57.01	54.71
Solyc06g066000.1.1	Tomato	plastid	57.01	54.71
PGSC0003DMT400052777	Potato	plastid	57.01	54.71
Solyc06g065990.1.1	Tomato	nucleus, plastid	56.54	54.26
AT4G32260.1	Thale cress	plastid	55.14	53.88
VIT_04s0008g05590.t01	Wine grape	plastid	53.74	53.49
CDX68826	Canola	plastid	53.27	52.78
CDX75228	Canola	plastid	53.27	51.58
Bra011329.1-P	Field mustard	plastid	53.27	51.58

Protein Annotations

MapMan:1.1.9.1.3	EntrezGene:8081476	InterPro:ATP_synth_b'	InterPro:ATP_synth_b/b'su_bac/chlpt	UniProt:C5WPC6	ncoils:Coil
EnsemblPlants:EER92459	ProteinID:EER92459	ProteinID:EER92459.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006810	GO:GO:0006811	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009605
GO:GO:0009607	GO:GO:0009719	GO:GO:0009735	GO:GO:0009941	GO:GO:0009987	GO:GO:0015078
GO:GO:0015986	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0019904	GO:GO:0042742
GO:GO:0045263	HAMAP:MF_01398	HAMAP:MF_01399	PFAM:PF00430	PANTHER:PTHR33445	EnsemblPlantsGene:SORBI_3001G417200
UniParc:UPI0001A82C7A	RefSeq:XP_002465461.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:69831102..69831746

Molecular Weight (calculated)

22765.6 Da

IEP (calculated)

5.008

GRAVY (calculated)

-0.037

Length

214 amino acids

Sequence
(BLAST)

001: MATAMMAAST TSCSPRRAAP VLKPVASSSS SSSSSSARPR RPLAQQLPRL LATAAAAVAA APLPVLAEQM EKAQLFDFNL TLPAIATEFL LLMVALDKLY
101: FTPLGKFMDE RDAKIRGELG DVKDASEEVK QLEDQAAAIM KAARAEIAAA LNKMKKETTA ELEGKLEEGR SRVEAELVEA LANLEAQKEE AVKALDAQIA
201: SLSDEIVKKV LPSA

Best Arabidopsis Sequence Match ( AT4G32260.1 )
(BLAST)

001: MAANSIMASS KPLISLSSNQ QPNRVQIPKF AKLPQIPKSL TSSTDLRSKA LSLSSATAKS LALIAAFAPP SMAEAMEKAQ LFDFNLTLPI IVVEFLFLMF
101: ALDKVYYSPL GNFMDQRDAS IKEKLASVKD TSTEVKELDE QAAAVMRAAR AEIAAALNKM KKETQVEVEE KLAEGRKKVE EELKEALASL ESQKEETIKA
201: LDSQIAALSE DIVKKVLPS

Arabidopsis Description

PDE334 [Source:UniProtKB/TrEMBL;Acc:A0A178V017]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.