Factsheet for Solyc09g015180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g090950.2.1
Solyc03g112520.2.1
Solyc03g113740.2.1
Solyc03g116320.2.1
Solyc08g006660.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08780.1	Solyc03g116320.2.1	AT3G47620.1	21798944
AT3G08780.1	Solyc03g113740.2.1	AT3G48150.1	21798944
AT3G08780.1	Solyc03g112520.2.1	AT3G54170.1	21798944
AT3G08780.1	Solyc01g090950.2.1	AT4G00150.1	21798944
AT3G08780.1	Solyc08g006660.1.1	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044093	Potato	cytosol	96.49	96.49
VIT_08s0058g00530.t01	Wine grape	cytosol	52.4	53.59
KRH76029	Soybean	nucleus, plastid	47.92	48.86
KRH65583	Soybean	plastid	30.99	47.32
Bra029720.1-P	Field mustard	nucleus	44.73	44.44
CDY36008	Canola	nucleus	44.09	43.95
CDY27973	Canola	nucleus	43.45	43.17
AT3G08780.1	Thale cress	cytosol	42.17	42.17
TraesCS5B01G149500.1	Wheat	cytosol	33.23	36.62
EES07862	Sorghum	plastid	31.95	35.21
TraesCS5D01G156000.1	Wheat	cytosol	31.95	35.21
Os04t0479300-01	Rice	extracellular, nucleus	30.67	35.16
TraesCS5A01G151000.1	Wheat	cytosol, nucleus, plasma membrane	31.31	34.51
Os07t0540200-01	Rice	cytosol, nucleus, plasma membrane	31.63	33.9
Zm00001d025308_P001	Maize	plastid	16.29	32.9
TraesCS2A01G325500.1	Wheat	plastid	28.43	32.6
KXG22792	Sorghum	endoplasmic reticulum, peroxisome, plastid	27.48	31.05
Zm00001d044621_P001	Maize	extracellular	28.11	30.66
TraesCS2B01G356400.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	26.52	30.29
HORVU2Hr1G082810.2	Barley	cytosol	28.11	29.43
TraesCS2D01G337200.1	Wheat	extracellular	26.52	29.33
TraesCS1A01G382300.1	Wheat	cytosol	21.09	26.83
TraesCS1B01G407600.1	Wheat	endoplasmic reticulum, plasma membrane	21.09	25.1

Protein Annotations

EnsemblPlants:Solyc09g015180.2.1	EnsemblPlantsGene:Solyc09g015180.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0031593	InterPro:FAM175	InterPro:FAM175_plant
PANTHER:PTHR31728	PANTHER:PTHR31728:SF1	PRINTS:PR02051	PRINTS:PR02054	SEG:seg	UniParc:UPI000276BD17
UniProt:K4CRZ0	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr9:+:8162482..8163827

Molecular Weight (calculated)

34515.9 Da

IEP (calculated)

6.798

GRAVY (calculated)

-0.311

Length

313 amino acids

Sequence
(BLAST)

001: MDDHHIHKIQ ISGTTLASVL HRFFSSSGDI HGLLFGHVSF STTISLSDDL ASNFSSVTPM NSASSSGADG PTLTATITDF LSIPSHFPLP LQHKHREDPS
101: CVLLGWFSGR RKTPLRPSLK DSTTTISLSS SVSHSFTPQN SPYPLSLPPS LFLLLSTPSQ EQLIHTHEYK AFQYRISTDS FDPKSLDVIN IGPSFRSHYG
201: SFSPISPFPS MTCDLRGPNA MAEDEKAETL VGIKRGLKDQ KELDLCAEGF EIGRLSKLMG SDSSNYTAEL EHLYDKMLLK LDNLARSVET SSAKVLEQEK
301: HNMKLRYKIA GLE

Best Arabidopsis Sequence Match ( AT3G08780.1 )
(BLAST)

001: MDDLSLEKIE ISGPTLASLI QRASSSPSDV DGLIFGQIHR IVSSNLSDDS PADIASSSSS SDQIVATVTS FICSGKTVSF YDPLGRVDSR RIDSLRVDSP
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR

Arabidopsis Description

AT3g08780/F17O14_25 [Source:UniProtKB/TrEMBL;Acc:Q8RY09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.