Factsheet for Os07t0540200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0656300-01
Os02t0662700-01
Os02t0663100-01
Os02t0747400-01
Os03t0103400-01
Os03t0849600-01
Os04t0555000-01
Os06t0105350-00
Os06t0226700-01
Os06t0474200-01
Os06t0679100-00
Os10t0551200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08780.1	Os02t0747400-01	AT3G47620.1	21798944
AT3G08780.1	Os06t0226700-01	AT3G47620.1	21798944
AT3G08780.1	Os02t0656300-01	AT3G48150.1	21798944
AT3G08780.1	Os06t0679100-00	AT3G48150.1	21798944
AT3G08780.1	Os06t0474200-01	AT3G54170.1	21798944
AT3G08780.1	Os02t0662700-01	AT4G00150.1	21798944
AT3G08780.1	Os02t0663100-01	AT4G00150.1	21798944
AT3G08780.1	Os03t0103400-01	AT4G00150.1	21798944
AT3G08780.1	Os04t0555000-01	AT4G00150.1	21798944
AT3G08780.1	Os06t0105350-00	AT4G00150.1	21798944
AT3G08780.1	Os10t0551200-01	AT4G00150.1	21798944
AT3G08780.1	Os03t0849600-01	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07862	Sorghum	plastid	68.15	70.07
KXG22792	Sorghum	endoplasmic reticulum, peroxisome, plastid	65.75	69.31
Zm00001d025308_P001	Maize	plastid	35.96	67.74
Zm00001d044621_P001	Maize	extracellular	65.41	66.55
TraesCS5D01G156000.1	Wheat	cytosol	64.38	66.2
TraesCS5B01G149500.1	Wheat	cytosol	64.04	65.85
TraesCS5A01G151000.1	Wheat	cytosol, nucleus, plasma membrane	64.04	65.85
Os04t0479300-01	Rice	extracellular, nucleus	53.42	57.14
CDY36008	Canola	nucleus	35.96	33.44
Bra029720.1-P	Field mustard	nucleus	35.62	33.02
VIT_08s0058g00530.t01	Wine grape	cytosol	34.25	32.68
CDY27973	Canola	nucleus	34.93	32.38
PGSC0003DMT400044093	Potato	cytosol	33.9	31.63
Solyc09g015180.2.1	Tomato	cytosol	33.9	31.63
KRH76029	Soybean	nucleus, plastid	32.88	31.27
AT3G08780.1	Thale cress	cytosol	33.22	30.99
KRH65583	Soybean	plastid	19.52	27.8

Protein Annotations

MapMan:35.2	EntrezGene:4343494	EMBL:AK105928	ProteinID:BAC80127.1	ProteinID:BAF21804.1	ProteinID:BAT01959.1
ncoils:Coil	ProteinID:EEE67341.1	InterPro:FAM175	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0031593	EnsemblPlantsGene:Os07g0540200
EnsemblPlants:Os07t0540200-01	PRINTS:PR02051	PANTHER:PTHR31728	PANTHER:PTHR31728:SF1	UniProt:Q7XHK9	UniParc:UPI00001B3B5A
RefSeq:XP_015647348.1	RefSeq:XP_015647349.1	RefSeq:XP_015647350.1	SEG:seg	:	:

Description

Similar to OSIGBa0116M22.12 protein. (Os07t0540200-01)

Coordinates

chr7:-:21299633..21311307

Molecular Weight (calculated)

30481.3 Da

IEP (calculated)

7.813

GRAVY (calculated)

-0.012

Length

292 amino acids

Sequence
(BLAST)

001: MAVGDDAAPA ATKISISGAA LAALLQRCGM ADGDCDGLLS GRASTTPAPP PSLSDYDDHA PAQSAPAISL SISGHSSLSR PSSLSDPLGR FHPSASAAAA
101: GPASIGFFSS RRRTALRPSM RELSLAHSLS KSLALAHPLL FLLVSPSSPN LSTHSYDHRA FLLIGSRLVP TSLHVVNVGP VFRDQYHSFA PDSPMPWLPL
201: AQHSSSSSAA AGDAHTIGEQ NAVDGVVDGF GLGKLQGILG SVAGQAAEMD GMYAGMLRRL EKLAREVEKS NLLVLKQENR NLLLRFRYAG LE

Best Arabidopsis Sequence Match ( AT3G08780.1 )
(BLAST)

001: MDDLSLEKIE ISGPTLASLI QRASSSPSDV DGLIFGQIHR IVSSNLSDDS PADIASSSSS SDQIVATVTS FICSGKTVSF YDPLGRVDSR RIDSLRVDSP
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR

Arabidopsis Description

AT3g08780/F17O14_25 [Source:UniProtKB/TrEMBL;Acc:Q8RY09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.