Factsheet for Os02t0663100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0809300-01
Os05t0180600-02
Os07t0264800-01
Os08t0307400-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	Os07t0264800-01	AT1G72030.1	21798944
AT4G00150.1	Os05t0180600-02	AT1G60490.1	21798944
AT4G00150.1	Os08t0307400-02	AT1G60490.1	21798944
AT4G00150.1	Os03t0809300-01	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0662700-01	Rice	cytosol	86.99	87.73
TraesCS6B01G277400.1	Wheat	mitochondrion	78.74	80.43
TraesCS6A01G247200.1	Wheat	mitochondrion	79.02	80.26
TraesCS6D01G229400.1	Wheat	mitochondrion	78.74	79.63
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	77.76	79.09
EES05768	Sorghum	cytosol	77.48	77.37
Zm00001d051387_P001	Maize	cytosol	76.22	76.98
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	72.73	73.65
Os04t0555000-01	Rice	cytosol	70.07	70.46
OQU85680	Sorghum	mitochondrion	62.38	68.93
Os10t0551200-01	Rice	cytosol	28.53	51.26
GSMUA_Achr11P...	Banana	cytosol	40.98	49.24
GSMUA_Achr5P20860_001	Banana	cytosol	35.38	45.67
Os03t0103400-01	Rice	cytosol	29.37	44.3
Os06t0105350-00	Rice	plastid	29.79	43.56
GSMUA_Achr8P11160_001	Banana	cytosol	39.86	42.73
VIT_02s0154g00400.t01	Wine grape	cytosol	29.37	41.02
GSMUA_Achr11P...	Banana	cytosol	39.58	40.9
AT4G00150.1	Thale cress	cytosol, plastid	30.35	38.89
Solyc08g078800.1.1	Tomato	plastid	24.9	37.55
CDY63062	Canola	cytosol, plastid	29.09	37.01
CDY63061	Canola	cytosol, plastid	29.09	37.01
Bra037319.1-P	Field mustard	cytosol, plastid	29.09	37.01
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	39.02	36.0
Bra003311.1-P	Field mustard	nucleus	24.48	34.59
CDX95633	Canola	cytosol	26.43	34.12
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	8.67	34.07
CDY67934	Canola	cytosol	28.25	33.78
CDY56248	Canola	cytosol	28.25	33.61
KRG88927	Soybean	cytosol	34.69	33.29
KRH75351	Soybean	cytosol	34.27	32.93
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	35.24	32.81
Solyc01g090950.2.1	Tomato	cytosol	35.24	32.77
CDX83398	Canola	cytosol	26.99	32.71
KRH76167	Soybean	cytosol	33.43	32.43
AT2G45160.1	Thale cress	cytosol	28.95	32.34
Bra000375.1-P	Field mustard	cytosol	27.27	32.13
PGSC0003DMT400012104	Potato	plastid	31.33	32.0
KRH65380	Soybean	cytosol	32.31	31.56
CDX89065	Canola	nucleus	24.2	31.45
AT3G60630.1	Thale cress	cytosol	27.27	31.3
CDY48367	Canola	cytosol	24.48	31.03
Os11t0160550-00	Rice	cytosol	15.66	24.3
Os03t0263300-01	Rice	cytosol	15.38	19.13
Os12t0162700-00	Rice	nucleus	8.25	15.99
Os11t0160600-01	Rice	cytosol	0.28	4.0

Protein Annotations

MapMan:15.5.12	EntrezGene:4330231	EMBL:AK101035	ProteinID:BAD25639.1	ProteinID:BAD27682.1	ProteinID:BAF09569.1
ProteinID:BAS80156.1	ProteinID:EAZ24094.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	InterPro:IPR005202	EnsemblPlantsGene:Os02g0663100	EnsemblPlants:Os02t0663100-01	PFAM:PF03514
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF64	UniProt:Q6H6L0	InterPro:TF_GRAS	UniParc:UPI00003B44FB
RefSeq:XP_015627071.1	SEG:seg	:	:	:	:

Description

hairy meristem 2GRAS transcription factor domain containing protein. (Os02t0663100-01)

Coordinates

chr2:+:26852082..26854948

Molecular Weight (calculated)

74136.0 Da

IEP (calculated)

6.246

GRAVY (calculated)

0.014

Length

715 amino acids

Sequence
(BLAST)

001: MRAALFGAER SGVVDLGGIG GGNRGLFWPA GKGGLVVVEP RSVLDCTRSP SPRNSTSTLS SSQGGGGADS TGVAAVSESS AAAAEATKWG APGEHGGGGG
101: GGGGGGKEDW SSGCELPPIP GTLDVGLVGG EGWDTMLGNA AAAAAGQDQS FLNWIIGAAG DLEQPGPPLL DNAGFGIPAV DPLGFSLDHS LSGVASDLSS
201: SGAHTATGGA GGGKASLGFG LFSPEATSLE QPPPPMLFHE GIDTKPPLLG AQPPGLLNHY HHQPPNPAAT FFMPHPSFPE HNHQSPLLQP PPKRHHSMPD
301: DIYLARNQLP PAAAAAQGLP FSPLHASVPF QLQPSPPPIR GAMKTTAAEA AQQQLLDELA AAAKATEAGN SVGAREILAR LNQQLPPLGK PFLRSASYLR
401: EALLLALADS HHGVSSVTTP LDVALKLAAY KSFSDLSPVL QFANFTATQA LLDEIGGTAT SCIHVIDFDL GVGGQWASFL QELAHRRAAG GVTLPLLKLT
501: AFVSTASHHP LELHLTQDNL SQFAADLGIP FEFNAVSLDA FNPGELISST GDEVVAVSLP VGCSARAPPL PAILRLVKQL SPKIVVAIDH GADRADLSFS
601: QHFLNCFQSC VFLLDSLDAA GIDADSACKI ERFLIQPRVH DMVLGRHKVH KAIAWRSVFA AAGFKPVPPS NLAEAQADCL LKRVQVRGFH VEKCGAALTL
701: YWQRGELVSI SSWRC

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.