Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi, extracellular, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400066799 | Potato | cytosol, nucleus, vacuole | 63.87 | 64.45 |
Solyc01g090950.2.1 | Tomato | cytosol | 63.61 | 64.11 |
VIT_02s0154g00400.t01 | Wine grape | cytosol | 40.52 | 61.33 |
AT4G00150.1 | Thale cress | cytosol, plastid | 41.55 | 57.71 |
KRG88927 | Soybean | cytosol | 55.1 | 57.32 |
KRH75351 | Soybean | cytosol | 54.71 | 56.99 |
KRH76167 | Soybean | cytosol | 50.71 | 53.32 |
Bra037319.1-P | Field mustard | cytosol, plastid | 38.58 | 53.2 |
CDY63061 | Canola | cytosol, plastid | 38.58 | 53.2 |
CDY63062 | Canola | cytosol, plastid | 38.58 | 53.2 |
KRH65380 | Soybean | cytosol | 49.29 | 52.19 |
Bra003311.1-P | Field mustard | nucleus | 32.65 | 50.0 |
GSMUA_Achr11P... | Banana | cytosol | 37.94 | 49.41 |
Zm00001d022034_P001 | Maize | cytosol | 19.48 | 49.35 |
CDX95633 | Canola | cytosol | 35.23 | 49.28 |
AT3G60630.1 | Thale cress | cytosol | 39.35 | 48.96 |
CDY67934 | Canola | cytosol | 37.29 | 48.33 |
GSMUA_Achr1P05940_001 | Banana | plastid | 32.9 | 48.3 |
CDY56248 | Canola | cytosol | 37.42 | 48.25 |
CDX83398 | Canola | cytosol | 36.52 | 47.97 |
GSMUA_Achr5P20860_001 | Banana | cytosol | 34.06 | 47.65 |
CDX89065 | Canola | nucleus | 33.68 | 47.45 |
GSMUA_Achr6P36740_001 | Banana | cytosol | 29.03 | 47.17 |
AT2G45160.1 | Thale cress | cytosol | 38.71 | 46.88 |
Bra000375.1-P | Field mustard | cytosol | 36.65 | 46.79 |
CDY48367 | Canola | cytosol | 33.81 | 46.45 |
Os10t0551200-01 | Rice | cytosol | 23.35 | 45.48 |
Bra014479.1-P | Field mustard | cytosol, peroxisome, plastid | 10.58 | 45.05 |
GSMUA_Achr8P11160_001 | Banana | cytosol | 38.06 | 44.23 |
Zm00001d027292_P001 | Maize | peroxisome | 25.42 | 40.96 |
GSMUA_Achr11P... | Banana | cytosol | 36.13 | 40.46 |
Zm00001d047957_P001 | Maize | cytosol | 6.71 | 40.31 |
Zm00001d035873_P001 | Maize | cytosol, plastid | 14.84 | 40.21 |
HORVU1Hr1G053510.1 | Barley | plastid | 31.61 | 39.52 |
Zm00001d045589_P001 | Maize | cytosol | 25.42 | 39.4 |
EER87695 | Sorghum | cytosol, plastid | 26.06 | 39.38 |
Os02t0662700-01 | Rice | cytosol | 36.0 | 39.35 |
TraesCS6D01G229400.1 | Wheat | mitochondrion | 35.74 | 39.18 |
EES11245 | Sorghum | cytosol, nucleus, peroxisome | 36.39 | 39.17 |
TraesCS1D01G212800.1 | Wheat | cytosol | 31.35 | 39.13 |
Zm00001d002718_P001 | Maize | cytosol | 36.39 | 39.11 |
TraesCS6A01G247200.1 | Wheat | mitochondrion | 35.48 | 39.06 |
TraesCS1A01G209400.1 | Wheat | mitochondrion, plastid | 31.48 | 39.04 |
Os02t0663100-01 | Rice | cytosol | 36.0 | 39.02 |
TraesCS6B01G277400.1 | Wheat | mitochondrion | 35.23 | 39.0 |
HORVU6Hr1G063650.1 | Barley | cytosol, mitochondrion, nucleus, plasma membrane | 35.35 | 38.98 |
TraesCS1B01G223400.1 | Wheat | cytosol, plastid | 31.35 | 38.94 |
Os04t0555000-01 | Rice | cytosol | 35.61 | 38.82 |
Os06t0105350-00 | Rice | plastid | 24.39 | 38.65 |
Zm00001d026158_P001 | Maize | cytosol | 35.48 | 38.3 |
EES05768 | Sorghum | cytosol | 35.23 | 38.13 |
Zm00001d051387_P001 | Maize | cytosol | 34.71 | 37.99 |
TraesCS7D01G011400.1 | Wheat | plastid | 26.06 | 37.97 |
Zm00001d029855_P001 | Maize | mitochondrion | 31.35 | 37.67 |
EER91968 | Sorghum | cytosol, mitochondrion | 30.84 | 37.34 |
TraesCS4A01G482000.1 | Wheat | plastid | 26.06 | 37.2 |
Os03t0103400-01 | Rice | cytosol | 22.71 | 37.13 |
TraesCS5A01G535000.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 29.94 | 36.42 |
Zm00001d017513_P001 | Maize | cytosol, mitochondrion, nucleus | 33.16 | 36.4 |
TraesCS4D01G360200.1 | Wheat | cytosol | 30.06 | 36.29 |
TraesCS4B01G367300.1 | Wheat | cytosol | 29.94 | 36.14 |
HORVU4Hr1G087700.2 | Barley | cytosol, mitochondrion, peroxisome, plastid | 29.42 | 35.74 |
TraesCS7A01G014200.1 | Wheat | plastid | 26.06 | 34.77 |
Zm00001d042852_P001 | Maize | cytosol | 10.97 | 34.55 |
Zm00001d022162_P001 | Maize | cytosol | 7.35 | 34.55 |
VIT_04s0023g01380.t01 | Wine grape | plastid | 23.74 | 34.2 |
Zm00001d027569_P001 | Maize | plastid | 13.68 | 33.87 |
Zm00001d018956_P001 | Maize | plastid | 6.06 | 32.87 |
OQU85680 | Sorghum | mitochondrion | 27.23 | 32.61 |
Zm00001d002023_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 14.19 | 31.07 |
Zm00001d031615_P001 | Maize | cytosol | 10.58 | 30.15 |
VIT_18s0001g03310.t01 | Wine grape | cytosol | 15.61 | 24.69 |
VIT_04s0044g00620.t01 | Wine grape | cytosol | 12.0 | 23.31 |
Protein Annotations
EntrezGene:100267664 | wikigene:100267664 | MapMan:15.5.12 | ProteinID:CCB61422 | ProteinID:CCB61422.1 | UniProt:F6I3A4 |
EMBL:FN596739 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 |
GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030154 | GO:GO:0040007 | GO:GO:0043565 |
GO:GO:0048768 | GO:GO:0051301 | InterPro:IPR005202 | EntrezGene:LOC100267664 | wikigene:LOC100267664 | PFAM:PF03514 |
PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF11 | InterPro:TF_GRAS | UniParc:UPI0002109420 | ArrayExpress:VIT_15s0048g00270 |
EnsemblPlantsGene:VIT_15s0048g00270 | EnsemblPlants:VIT_15s0048g00270.t01 | unigene:Vvi.8825 | RefSeq:XP_002274837 | RefSeq:XP_002274837.1 | SEG:seg |
Description
No Description!
Coordinates
chr15:-:14396828..14399794
Molecular Weight (calculated)
84742.0 Da
IEP (calculated)
6.283
GRAVY (calculated)
-0.263
Length
775 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGKRAVSEL VCGCWTRLSG FSFFLMKDMP LPLELEGKGV FEICLNSLLE KWNKEEEEGG CCVGTEPTSV LDTRRSPSPP TSTSTLSSSC GGGGSDTAGV
101: AAVSGNPSQK WPPAQPDTTS SNAGVELHPI PASVDLGAGE KCGLGMEDWE SVLSETAASP SQEQSILRWI MGDVEDPSVG LNKLLQSGGG GPPDFEFSSG
201: FGVVDQGFGF EPCLGSGSSM NAPCPGFPPT SNSVNSINHG RIGPVSNPNQ PNFKIHNPQS NPNFAKSGNN LMPISFNQQQ LQQQPFEALD EKPQILIPQV
301: LINQHQAQHT QNPAFFLPLP YAQQEQNLLL PPQAKRHNTG PIGSIEQNCP VPKVPFSDSG QELFARRQQQ QQQAQGFPQQ LQLLPHHLQP RPAMGSKPKM
401: VGEEMGHHQQ YQQVIIDQLF KAAELVETGN TILAQGILAR LNHQLSPIGK PFQRAAFYFK EALQLLLHSN SNNTNPLATS PHSSPFSLIF KIGAYKSFSE
501: ISPLIQFANF TCIQAILEAL EGFDRIHIID FDIGYGGQWA SLMQELALRN GGAPSLKITA FASLSNHDQL ELGLARENLN HFAGEINMAF ELEILSLDSL
601: NSLPLHLSEN EAVAVNLPVG SFSNYPLPLP LVLRVVKQLS PKIMVSLDRG CDRTDLPYSH HILHAFQSYL ALLESLDAVN VNSDALQKIE RFLLQPGIEK
701: IVLGRHRSPE KTPPWRALLL SSGFSPLTFS NFSESQAECL VKRTPVRGFH VEKRQSSLVL CWQRKDLISA SAWRC
101: AAVSGNPSQK WPPAQPDTTS SNAGVELHPI PASVDLGAGE KCGLGMEDWE SVLSETAASP SQEQSILRWI MGDVEDPSVG LNKLLQSGGG GPPDFEFSSG
201: FGVVDQGFGF EPCLGSGSSM NAPCPGFPPT SNSVNSINHG RIGPVSNPNQ PNFKIHNPQS NPNFAKSGNN LMPISFNQQQ LQQQPFEALD EKPQILIPQV
301: LINQHQAQHT QNPAFFLPLP YAQQEQNLLL PPQAKRHNTG PIGSIEQNCP VPKVPFSDSG QELFARRQQQ QQQAQGFPQQ LQLLPHHLQP RPAMGSKPKM
401: VGEEMGHHQQ YQQVIIDQLF KAAELVETGN TILAQGILAR LNHQLSPIGK PFQRAAFYFK EALQLLLHSN SNNTNPLATS PHSSPFSLIF KIGAYKSFSE
501: ISPLIQFANF TCIQAILEAL EGFDRIHIID FDIGYGGQWA SLMQELALRN GGAPSLKITA FASLSNHDQL ELGLARENLN HFAGEINMAF ELEILSLDSL
601: NSLPLHLSEN EAVAVNLPVG SFSNYPLPLP LVLRVVKQLS PKIMVSLDRG CDRTDLPYSH HILHAFQSYL ALLESLDAVN VNSDALQKIE RFLLQPGIEK
701: IVLGRHRSPE KTPPWRALLL SSGFSPLTFS NFSESQAECL VKRTPVRGFH VEKRQSSLVL CWQRKDLISA SAWRC
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.