CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90674
EER96202
KXG24803

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	EER96202	AT1G72030.1	21798944
AT4G00150.1	KXG24803	AT1G60490.1	21798944
AT4G00150.1	EER90674	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002718_P001	Maize	cytosol	92.92	92.79
Zm00001d026158_P001	Maize	cytosol	90.28	90.53
Zm00001d022034_P001	Maize	cytosol	38.33	90.2
Os04t0555000-01	Rice	cytosol	78.47	79.47
EES05768	Sorghum	cytosol	68.19	68.58
OQU85680	Sorghum	mitochondrion	53.61	59.66
GSMUA_Achr11P...	Banana	cytosol	40.56	49.08
EER91968	Sorghum	cytosol, mitochondrion	40.69	45.78
GSMUA_Achr5P20860_001	Banana	cytosol	34.86	45.31
GSMUA_Achr8P11160_001	Banana	cytosol	40.0	43.18
EER87695	Sorghum	cytosol, plastid	30.0	42.11
GSMUA_Achr11P...	Banana	cytosol	40.0	41.62
VIT_02s0154g00400.t01	Wine grape	cytosol	28.89	40.62
AT4G00150.1	Thale cress	cytosol, plastid	30.97	39.96
Solyc08g078800.1.1	Tomato	plastid	25.42	38.61
CDY63062	Canola	cytosol, plastid	28.89	37.01
CDY63061	Canola	cytosol, plastid	28.89	37.01
Bra037319.1-P	Field mustard	cytosol, plastid	28.89	37.01
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	39.17	36.39
CDX95633	Canola	cytosol	27.36	35.56
Bra003311.1-P	Field mustard	nucleus	24.72	35.18
CDY67934	Canola	cytosol	29.03	34.95
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	8.75	34.62
CDY56248	Canola	cytosol	28.47	34.11
CDX83398	Canola	cytosol	27.92	34.07
Bra000375.1-P	Field mustard	cytosol	28.33	33.61
KRG88927	Soybean	cytosol	34.72	33.56
Solyc01g090950.2.1	Tomato	cytosol	35.56	33.29
AT2G45160.1	Thale cress	cytosol	29.58	33.28
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	35.42	33.2
KRH76167	Soybean	cytosol	33.75	32.97
KRH75351	Soybean	cytosol	34.03	32.93
PGSC0003DMT400012104	Potato	plastid	31.94	32.86
CDX89065	Canola	nucleus	24.86	32.55
CDY48367	Canola	cytosol	25.28	32.27
AT3G60630.1	Thale cress	cytosol	27.78	32.1
KRH65380	Soybean	cytosol	32.5	31.97
KXG23028	Sorghum	cytosol	14.72	21.33
OQU92876	Sorghum	cytosol	14.72	19.06

Protein Annotations

MapMan:15.5.12	EntrezGene:8055973	UniProt:C5YDJ7	EnsemblPlants:EES11245	ProteinID:EES11245	ProteinID:EES11245.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF64	EnsemblPlantsGene:SORBI_3006G172900
InterPro:TF_GRAS	UniParc:UPI0001A87004	RefSeq:XP_002446917.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:52876465..52882041

Molecular Weight (calculated)

74921.1 Da

IEP (calculated)

5.640

GRAVY (calculated)

-0.042

Length

720 amino acids

Sequence
(BLAST)

001: MRAAPFSADG SGAGTIEALL WPDGKGGGGG GDLLVEPTSV LDCRRSPSPP YSTSTLSSSL GGAAGDSSSG VAAVSDNSAA AAAEATKWAA PGEHGGGGGG
101: GGGGGGRKEE WSGGELPPIP GTLDVGFVGE EGWDAMLGDA TAVAGQDQTF LNWIMTAPGD MEPPAPPLLG NAAGFGFPTS DPLGFSLQHH PGGGGGASAG
201: ALASDLSSPG ARSLTSSSGS SSKATSTFGL LPTEAVLQPP PPAATTMPFH DGGDIKPPLL GVPSANLLLN QHQTLPAASF FMPLPSFPDH QHQPHLPPPP
301: KRHHSMPDNL FLLQNQLQPP PQGLPFPPVH NTGPFQLQPS LQPPRGALKT TPAAQQHQQL LDELAAAAKA AEVGNSIGAL EILARLNQQL PPVGKPFLRS
401: ASYLKEALLL ALSDGHQGST RLTSPIDVVL KLGAYKSFSD LSPVLQFANF TATQALLDEI ASTTSSCIRI IDFDLGVGGQ WASFLQELAH RRGTGNVTLP
501: MLKLTAFVSS ASHHPLELHL TRENLSQFAA DLGIPFEFTA INLDAFDPAE LIPPTADEVV AVCLPVGCSA RMPPLPMLLQ LVKQLAPKIA VAIDHGSDRG
601: DLPFSQHFMN CFQSCMFLLD SLDAAGTNAD AASKIERFLI QSRVEDAVLG RRKAEKAMAW RAVFTSAGFA PVPLSNLAEA QADCLLKRVQ VRGFHVEKCG
701: MGLALYWQRG ELVSVSAWRC

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.