Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014479.1-P | Field mustard | cytosol, peroxisome, plastid | 24.24 | 82.97 |
| CDY48367 | Canola | cytosol | 73.19 | 80.85 |
| CDX89065 | Canola | nucleus | 70.95 | 80.36 |
| AT2G45160.1 | Thale cress | cytosol | 64.21 | 62.5 |
| AT4G00150.1 | Thale cress | cytosol, plastid | 41.73 | 46.59 |
| Zm00001d022034_P001 | Maize | cytosol | 20.55 | 41.83 |
| VIT_15s0048g00270.t01 | Wine grape | extracellular, golgi, mitochondrion, nucleus | 48.96 | 39.35 |
| PGSC0003DMT400066799 | Potato | cytosol, nucleus, vacuole | 48.48 | 39.32 |
| Solyc01g090950.2.1 | Tomato | cytosol | 48.48 | 39.27 |
| KRH76167 | Soybean | cytosol | 44.62 | 37.72 |
| KRH75351 | Soybean | cytosol | 44.94 | 37.63 |
| KRH65380 | Soybean | cytosol | 43.5 | 37.02 |
| KRG88927 | Soybean | cytosol | 43.98 | 36.78 |
| Os10t0551200-01 | Rice | cytosol | 22.95 | 35.93 |
| GSMUA_Achr6P36740_001 | Banana | cytosol | 26.16 | 34.17 |
| GSMUA_Achr11P... | Banana | cytosol | 32.58 | 34.12 |
| GSMUA_Achr5P20860_001 | Banana | cytosol | 30.34 | 34.12 |
| Zm00001d047957_P001 | Maize | cytosol | 7.06 | 34.11 |
| GSMUA_Achr1P05940_001 | Banana | plastid | 28.89 | 34.09 |
| Zm00001d045589_P001 | Maize | cytosol | 26.97 | 33.6 |
| Os06t0105350-00 | Rice | plastid | 26.0 | 33.13 |
| EER87695 | Sorghum | cytosol, plastid | 27.13 | 32.94 |
| TraesCS7D01G011400.1 | Wheat | plastid | 28.09 | 32.89 |
| Zm00001d035873_P001 | Maize | cytosol, plastid | 15.09 | 32.87 |
| TraesCS4A01G482000.1 | Wheat | plastid | 27.77 | 31.86 |
| GSMUA_Achr8P11160_001 | Banana | cytosol | 34.03 | 31.78 |
| Zm00001d027292_P001 | Maize | peroxisome | 24.24 | 31.39 |
| Os03t0103400-01 | Rice | cytosol | 23.6 | 31.01 |
| HORVU1Hr1G053510.1 | Barley | plastid | 30.82 | 30.97 |
| TraesCS1D01G212800.1 | Wheat | cytosol | 30.66 | 30.76 |
| TraesCS1A01G209400.1 | Wheat | mitochondrion, plastid | 30.82 | 30.72 |
| TraesCS1B01G223400.1 | Wheat | cytosol, plastid | 30.66 | 30.61 |
| TraesCS7A01G014200.1 | Wheat | plastid | 27.93 | 29.95 |
| EER91968 | Sorghum | cytosol, mitochondrion | 30.5 | 29.69 |
| Zm00001d029855_P001 | Maize | mitochondrion | 29.86 | 28.84 |
| Zm00001d018956_P001 | Maize | plastid | 6.58 | 28.67 |
| Zm00001d022162_P001 | Maize | cytosol | 7.54 | 28.48 |
| GSMUA_Achr11P... | Banana | cytosol | 31.62 | 28.47 |
| Zm00001d002718_P001 | Maize | cytosol | 32.58 | 28.16 |
| TraesCS5A01G535000.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 28.73 | 28.1 |
| Zm00001d026158_P001 | Maize | cytosol | 32.26 | 27.99 |
| TraesCS4D01G360200.1 | Wheat | cytosol | 28.73 | 27.88 |
| TraesCS4B01G367300.1 | Wheat | cytosol | 28.73 | 27.88 |
| TraesCS6B01G277400.1 | Wheat | mitochondrion | 31.3 | 27.86 |
| EES11245 | Sorghum | cytosol, nucleus, peroxisome | 32.1 | 27.78 |
| AT4G36710.1 | Thale cress | cytosol | 21.67 | 27.78 |
| TraesCS6D01G229400.1 | Wheat | mitochondrion | 31.46 | 27.72 |
| TraesCS6A01G247200.1 | Wheat | mitochondrion | 31.3 | 27.7 |
| Os02t0662700-01 | Rice | cytosol | 31.46 | 27.64 |
| HORVU6Hr1G063650.1 | Barley | cytosol, mitochondrion, nucleus, plasma membrane | 30.98 | 27.45 |
| HORVU4Hr1G087700.2 | Barley | cytosol, mitochondrion, peroxisome, plastid | 28.09 | 27.43 |
| EES05768 | Sorghum | cytosol | 31.46 | 27.37 |
| Os02t0663100-01 | Rice | cytosol | 31.3 | 27.27 |
| Zm00001d051387_P001 | Maize | cytosol | 30.98 | 27.26 |
| Os04t0555000-01 | Rice | cytosol | 30.82 | 27.0 |
| Zm00001d027569_P001 | Maize | plastid | 13.48 | 26.84 |
| Zm00001d042852_P001 | Maize | cytosol | 10.11 | 25.61 |
| Zm00001d017513_P001 | Maize | cytosol, mitochondrion, nucleus | 28.89 | 25.5 |
| Zm00001d002023_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 13.32 | 23.45 |
| Zm00001d031615_P001 | Maize | cytosol | 9.79 | 22.43 |
| AT4G08250.1 | Thale cress | cytosol | 17.34 | 22.36 |
| OQU85680 | Sorghum | mitochondrion | 22.79 | 21.95 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:825234 | ProteinID:ACB31493.1 | ProteinID:ACB31494.1 | ProteinID:ACB31495.1 | ProteinID:ACB31496.1 |
| ProteinID:ACB31497.1 | ProteinID:ACB31498.1 | ProteinID:ACB31499.1 | ProteinID:ACB31500.1 | ProteinID:ACB31501.1 | ProteinID:ACB31502.1 |
| ProteinID:ACB31503.1 | ProteinID:ACB31504.1 | ProteinID:ACB31505.1 | ProteinID:ACB31506.1 | ProteinID:ACB31507.1 | ProteinID:ACB31508.1 |
| ProteinID:ACB31509.1 | ProteinID:ACB31510.1 | ProteinID:ACB31511.1 | ProteinID:ACB31512.1 | ProteinID:ACB31513.1 | ProteinID:ACB31514.1 |
| ProteinID:ACB31515.1 | ProteinID:ACB31516.1 | ProteinID:AEE80090.1 | ArrayExpress:AT3G60630 | EnsemblPlantsGene:AT3G60630 | RefSeq:AT3G60630 |
| TAIR:AT3G60630 | RefSeq:AT3G60630-TAIR-G | EnsemblPlants:AT3G60630.1 | TAIR:AT3G60630.1 | EMBL:AY064062 | EMBL:AY096372 |
| Unigene:At.27084 | ProteinID:CAB82667.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030154 | GO:GO:0040007 |
| GO:GO:0043565 | GO:GO:0048768 | GO:GO:0051301 | Symbol:HAM2 | InterPro:IPR005202 | RefSeq:NP_191622.1 |
| PFAM:PF03514 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000017 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009049 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0020148 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF11 | UniProt:Q9M000 | InterPro:TF_GRAS |
| UniParc:UPI00000A75BB | SEG:seg | : | : | : | : |
Description
SCL22Scarecrow-like protein 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9M000]
Coordinates
chr3:-:22410240..22412663
Molecular Weight (calculated)
68093.5 Da
IEP (calculated)
4.527
GRAVY (calculated)
-0.315
Length
623 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLPFEQFQG KGVLGFLDSS SSPGYKIWAN PEKLHGRVEE DLCFVVNNGG FSEPTSVLDS VRSPSPFVSS STTTLSSSHG GPSGGGAAAA TFSGADGKCD
101: QMGFEDLDGV LSGGSPGQEQ SIFRLIMAGD VVDPGSEFVG FDIGSGSDPV IDNPNPLFGY GFPFQNAPEE EKFQISINPN PGFFSDPPSS PPAKRLNSGQ
201: PGSQHLQWVF PFSDPGHESH DPFLTPPKIA GEDQNDQDQS AVIIDQLFSA AAELTTNGGD NNPVLAQGIL ARLNHNLNNN NDDTNNNPKP PFHRAASYIT
301: EALHSLLQDS SLSPPSLSPP QNLIFRIAAY RAFSETSPFL QFVNFTANQT ILESFEGFDR IHIVDFDIGY GGQWASLIQE LAGKRNRSSS APSLKITAFA
401: SPSTVSDEFE LRFTEENLRS FAGETGVSFE IELLNMEILL NPTYWPLSLF RSSEKEAIAV NLPISSMVSG YLPLILRFLK QISPNVVVCS DRSCDRNNDA
501: PFPNGVINAL QYYTSLLESL DSGNLNNAEA ATSIERFCVQ PSIQKLLTNR YRWMERSPPW RSLFGQCGFT PVTLSQTAET QAEYLLQRNP MRGFHLEKRQ
601: SSSPSLVLCW QRKELVTVSA WKC
101: QMGFEDLDGV LSGGSPGQEQ SIFRLIMAGD VVDPGSEFVG FDIGSGSDPV IDNPNPLFGY GFPFQNAPEE EKFQISINPN PGFFSDPPSS PPAKRLNSGQ
201: PGSQHLQWVF PFSDPGHESH DPFLTPPKIA GEDQNDQDQS AVIIDQLFSA AAELTTNGGD NNPVLAQGIL ARLNHNLNNN NDDTNNNPKP PFHRAASYIT
301: EALHSLLQDS SLSPPSLSPP QNLIFRIAAY RAFSETSPFL QFVNFTANQT ILESFEGFDR IHIVDFDIGY GGQWASLIQE LAGKRNRSSS APSLKITAFA
401: SPSTVSDEFE LRFTEENLRS FAGETGVSFE IELLNMEILL NPTYWPLSLF RSSEKEAIAV NLPISSMVSG YLPLILRFLK QISPNVVVCS DRSCDRNNDA
501: PFPNGVINAL QYYTSLLESL DSGNLNNAEA ATSIERFCVQ PSIQKLLTNR YRWMERSPPW RSLFGQCGFT PVTLSQTAET QAEYLLQRNP MRGFHLEKRQ
601: SSSPSLVLCW QRKELVTVSA WKC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.