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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, peroxisome, secretory
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:cytosol
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d013027_P002
Zm00001d019343_P001
Zm00001d034575_P001
Zm00001d050219_P004

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G60630.1 Zm00001d019343_P001 AT1G72030.1 21798944
AT4G00150.1 Zm00001d050219_P004 AT1G60490.1 21798944
AT4G00150.1 Zm00001d013027_P002 AT5G66720.1 21798944
AT4G00150.1 Zm00001d034575_P001 AT5G66720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d042852_P001 Maize cytosol 79.41 87.8
Zm00001d047957_P001 Maize cytosol 29.78 62.79
Zm00001d018956_P001 Maize plastid 30.15 57.34
Zm00001d002023_P001 Maize cytosol, mitochondrion, peroxisome, plastid 70.59 54.24
Zm00001d022162_P001 Maize cytosol 26.84 44.24
Zm00001d035873_P001 Maize cytosol, plastid 36.76 34.97
Zm00001d029855_P001 Maize mitochondrion 77.57 32.71
EER91968 Sorghum cytosol, mitochondrion 72.06 30.62
Zm00001d027569_P001 Maize plastid 33.46 29.07
TraesCS1D01G212800.1 Wheat cytosol 59.93 26.25
TraesCS1B01G223400.1 Wheat cytosol, plastid 59.93 26.12
TraesCS1A01G209400.1 Wheat mitochondrion, plastid 59.93 26.08
HORVU1Hr1G053510.1 Barley plastid 58.82 25.81
Os10t0551200-01 Rice cytosol 35.29 24.12
Zm00001d027292_P001 Maize peroxisome 38.24 21.62
Bra014479.1-P Field mustard cytosol, peroxisome, plastid 12.5 18.68
Zm00001d045589_P001 Maize cytosol 30.15 16.4
Zm00001d022034_P001 Maize cytosol 18.38 16.34
GSMUA_Achr11P... Banana cytosol 31.99 14.62
Zm00001d002718_P001 Maize cytosol 37.87 14.29
Zm00001d051387_P001 Maize cytosol 37.13 14.27
Zm00001d026158_P001 Maize cytosol 36.03 13.65
GSMUA_Achr5P20860_001 Banana cytosol 26.84 13.18
Zm00001d017513_P001 Maize cytosol, mitochondrion, nucleus 34.19 13.17
VIT_02s0154g00400.t01 Wine grape cytosol 23.53 12.5
CDY63062 Canola cytosol, plastid 25.74 12.46
CDY63061 Canola cytosol, plastid 25.74 12.46
Bra037319.1-P Field mustard cytosol, plastid 25.74 12.46
GSMUA_Achr8P11160_001 Banana cytosol 30.51 12.44
GSMUA_Achr11P... Banana cytosol 31.25 12.28
Solyc08g078800.1.1 Tomato plastid 20.96 12.03
AT4G00150.1 Thale cress cytosol, plastid 23.9 11.65
PGSC0003DMT400066799 Potato cytosol, nucleus, vacuole 30.88 10.94
Bra003311.1-P Field mustard nucleus 20.22 10.87
Solyc01g090950.2.1 Tomato cytosol 30.51 10.79
VIT_15s0048g00270.t01 Wine grape extracellular, golgi, mitochondrion, nucleus 30.15 10.58
PGSC0003DMT400012104 Potato plastid 27.21 10.57
CDX95633 Canola cytosol 20.59 10.11
KRH75351 Soybean cytosol 26.84 9.81
AT3G60630.1 Thale cress cytosol 22.43 9.79
KRG88927 Soybean cytosol 26.47 9.66
CDX89065 Canola nucleus 19.49 9.64
CDX83398 Canola cytosol 20.59 9.49
CDY48367 Canola cytosol 19.49 9.4
CDY56248 Canola cytosol 20.22 9.15
AT2G45160.1 Thale cress cytosol 21.32 9.06
Bra000375.1-P Field mustard cytosol 20.22 9.06
CDY67934 Canola cytosol 19.85 9.03
KRH76167 Soybean cytosol 24.26 8.96
KRH65380 Soybean cytosol 23.16 8.61
Zm00001d053163_P001 Maize cytosol 12.5 7.19
Zm00001d041919_P001 Maize cytosol, peroxisome, plastid 12.13 6.71
Zm00001d028526_P001 Maize cytosol 11.03 5.32
Protein Annotations
EnsemblPlants:Zm00001d031615_P001EnsemblPlants:Zm00001d031615_T001EnsemblPlantsGene:Zm00001d031615InterPro:IPR005202InterPro:TF_GRASPANTHER:PTHR31636
PANTHER:PTHR31636:SF125PFAM:PF03514ProteinID:ONM03212.1SEG:segUniParc:UPI0002214BDFUniProt:A0A1D6KJV7
MapMan:15.5.12:::::
Description
Scarecrow-like protein 6
Coordinates
chr1:+:196221931..196223185
Molecular Weight (calculated)
29402.9 Da
IEP (calculated)
5.297
GRAVY (calculated)
0.285
Length
272 amino acids
Sequence
(BLAST)
001: MGLGAGEGWD IADAVAPPGL APDHTFLRWI IGGEDASAAM GSVMDSPVLE LDHAPSMMSL AFGSTMPFAP TMEDAKPGTA LVSPASHHLL ELNLIHENLS
101: GFARELGMFL QFATYNVDAL DPAELVAITS GDAVAVHLPV GSAHVAAMAA VLRLVKRLVT KVVVSVDRGC DRTELSFATH LLQAFQPCVS LLDSSDAMGG
201: ADAEAVGRIE RFMVQSDVEL TEVFTTIILF HQMLLVPKKK QNKKEEARII RTARMQVLIP WGYWIRLNFL LK
Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.