Factsheet for Bra014479.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001494.1-P
Bra003900.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	Bra003900.1-P	AT1G72030.1	21798944
AT3G60630.1	Bra001494.1-P	AT3G13227.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89065	Canola	nucleus	98.9	32.73
AT3G60630.1	Thale cress	cytosol	82.97	24.24
Bra003311.1-P	Field mustard	nucleus	67.03	24.11
Bra000375.1-P	Field mustard	cytosol	70.88	21.25
Zm00001d035873_P001	Maize	cytosol, plastid	32.97	20.98
Zm00001d027569_P001	Maize	plastid	30.22	17.57
Zm00001d022034_P001	Maize	cytosol	26.37	15.69
GSMUA_Achr6P36740_001	Banana	cytosol	40.66	15.51
GSMUA_Achr1P05940_001	Banana	plastid	44.51	15.34
Os10t0551200-01	Rice	cytosol	33.52	15.33
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	29.12	14.97
Zm00001d042852_P001	Maize	cytosol	19.23	14.23
Zm00001d047957_P001	Maize	cytosol	9.89	13.95
Os06t0105350-00	Rice	plastid	36.81	13.7
Bra037319.1-P	Field mustard	cytosol, plastid	42.31	13.7
Zm00001d045589_P001	Maize	cytosol	37.36	13.6
Zm00001d027292_P001	Maize	peroxisome	35.71	13.51
Os03t0103400-01	Rice	cytosol	35.16	13.5
EER87695	Sorghum	cytosol, plastid	36.81	13.06
Zm00001d031615_P001	Maize	cytosol	18.68	12.5
TraesCS7D01G011400.1	Wheat	plastid	36.26	12.41
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	50.55	11.98
TraesCS4A01G482000.1	Wheat	plastid	35.71	11.97
Solyc01g090950.2.1	Tomato	cytosol	50.55	11.96
Zm00001d018956_P001	Maize	plastid	9.34	11.89
Bra028100.1-P	Field mustard	cytosol	31.87	11.81
GSMUA_Achr11P...	Banana	cytosol	37.91	11.6
TraesCS7A01G014200.1	Wheat	plastid	36.26	11.36
KRH65380	Soybean	cytosol	45.05	11.2
TraesCS1D01G212800.1	Wheat	cytosol	37.91	11.11
TraesCS1B01G223400.1	Wheat	cytosol, plastid	37.91	11.06
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	37.91	11.04
GSMUA_Achr5P20860_001	Banana	cytosol	33.52	11.01
KRH76167	Soybean	cytosol	44.51	10.99
HORVU1Hr1G053510.1	Barley	plastid	37.36	10.97
KRH75351	Soybean	cytosol	44.51	10.89
GSMUA_Achr8P11160_001	Banana	cytosol	39.56	10.79
KRG88927	Soybean	cytosol	43.96	10.74
EER91968	Sorghum	cytosol, mitochondrion	37.36	10.62
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	45.05	10.58
Zm00001d029855_P001	Maize	mitochondrion	37.36	10.54
TraesCS5A01G535000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	34.62	9.89
TraesCS4D01G360200.1	Wheat	cytosol	34.62	9.81
TraesCS4B01G367300.1	Wheat	cytosol	34.62	9.81
HORVU4Hr1G087700.2	Barley	cytosol, mitochondrion, peroxisome, plastid	34.07	9.72
GSMUA_Achr11P...	Banana	cytosol	35.71	9.39
Os04t0555000-01	Rice	cytosol	36.26	9.28
Os02t0662700-01	Rice	cytosol	35.71	9.17
Zm00001d002718_P001	Maize	cytosol	35.71	9.02
TraesCS6B01G277400.1	Wheat	mitochondrion	34.62	9.0
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	34.62	8.96
Bra011700.1-P	Field mustard	cytosol	34.07	8.96
TraesCS6A01G247200.1	Wheat	mitochondrion	34.62	8.95
TraesCS6D01G229400.1	Wheat	mitochondrion	34.62	8.91
Zm00001d051387_P001	Maize	cytosol	34.62	8.9
EES05768	Sorghum	cytosol	34.62	8.8
EES11245	Sorghum	cytosol, nucleus, peroxisome	34.62	8.75
Os02t0663100-01	Rice	cytosol	34.07	8.67
Zm00001d026158_P001	Maize	cytosol	34.07	8.64
Bra002894.1-P	Field mustard	cytosol	22.53	8.56
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	30.77	7.93
Zm00001d022162_P001	Maize	cytosol	4.4	4.85
OQU85680	Sorghum	mitochondrion	12.09	3.4

Protein Annotations

EnsemblPlants:Bra014479.1	EnsemblPlants:Bra014479.1-P	EnsemblPlantsGene:Bra014479	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF11	PFAM:PF03514	PFscan:PS50985	UniParc:UPI0002543C09	UniProt:M4DDB1
MapMan:15.5.12	:	:	:	:	:

Description

AT3G60630 (E=8e-081) | scarecrow transcription factor family protein

Coordinates

chrA04:+:912915..913463

Molecular Weight (calculated)

20764.2 Da

IEP (calculated)

7.824

GRAVY (calculated)

-0.068

Length

182 amino acids

Sequence
(BLAST)

001: MEMLNMETLL NPPLSLIRSS EKEAIAVNLP ISSVISGYLP LILRFLKQIS PNVVVCSDTI PDAPFPNAVV DALQYYTSFL ESLESPNSSQ EAVTSIERFC
101: VQPWMQRLLT NRYRWMEKSP PWRSLFGQCG FTAVAMSQTA ETQAEYLLQR NPMRGFHLDK RQSSLVLCWQ KRELVAVSAW KC

Best Arabidopsis Sequence Match ( AT3G60630.1 )
(BLAST)

001: MPLPFEQFQG KGVLGFLDSS SSPGYKIWAN PEKLHGRVEE DLCFVVNNGG FSEPTSVLDS VRSPSPFVSS STTTLSSSHG GPSGGGAAAA TFSGADGKCD
101: QMGFEDLDGV LSGGSPGQEQ SIFRLIMAGD VVDPGSEFVG FDIGSGSDPV IDNPNPLFGY GFPFQNAPEE EKFQISINPN PGFFSDPPSS PPAKRLNSGQ
201: PGSQHLQWVF PFSDPGHESH DPFLTPPKIA GEDQNDQDQS AVIIDQLFSA AAELTTNGGD NNPVLAQGIL ARLNHNLNNN NDDTNNNPKP PFHRAASYIT
301: EALHSLLQDS SLSPPSLSPP QNLIFRIAAY RAFSETSPFL QFVNFTANQT ILESFEGFDR IHIVDFDIGY GGQWASLIQE LAGKRNRSSS APSLKITAFA
401: SPSTVSDEFE LRFTEENLRS FAGETGVSFE IELLNMEILL NPTYWPLSLF RSSEKEAIAV NLPISSMVSG YLPLILRFLK QISPNVVVCS DRSCDRNNDA
501: PFPNGVINAL QYYTSLLESL DSGNLNNAEA ATSIERFCVQ PSIQKLLTNR YRWMERSPPW RSLFGQCGFT PVTLSQTAET QAEYLLQRNP MRGFHLEKRQ
601: SSSPSLVLCW QRKELVTVSA WKC

Arabidopsis Description

SCL22Scarecrow-like protein 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9M000]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.