CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90674
EER96202
KXG24803

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	EER96202	AT1G72030.1	21798944
AT4G00150.1	KXG24803	AT1G60490.1	21798944
AT4G00150.1	EER90674	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045589_P001	Maize	cytosol	85.19	87.4
TraesCS7D01G011400.1	Wheat	plastid	66.28	63.91
Os06t0105350-00	Rice	plastid	59.06	61.96
TraesCS4A01G482000.1	Wheat	plastid	64.52	60.96
TraesCS7A01G014200.1	Wheat	plastid	65.69	58.0
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	13.06	36.81
GSMUA_Achr11P...	Banana	cytosol	38.99	33.61
VIT_02s0154g00400.t01	Wine grape	cytosol	33.53	33.59
EER91968	Sorghum	cytosol, mitochondrion	40.94	32.81
GSMUA_Achr5P20860_001	Banana	cytosol	35.09	32.49
AT4G00150.1	Thale cress	cytosol, plastid	34.5	31.72
Solyc08g078800.1.1	Tomato	plastid	29.24	31.65
Bra037319.1-P	Field mustard	cytosol, plastid	34.5	31.49
CDY63061	Canola	cytosol, plastid	34.31	31.32
CDY63062	Canola	cytosol, plastid	34.31	31.32
GSMUA_Achr8P11160_001	Banana	cytosol	39.57	30.43
CDX95633	Canola	cytosol	32.55	30.14
EES11245	Sorghum	cytosol, nucleus, peroxisome	42.11	30.0
EES05768	Sorghum	cytosol	41.52	29.75
Bra003311.1-P	Field mustard	nucleus	28.27	28.66
CDY48367	Canola	cytosol	31.38	28.55
CDX89065	Canola	nucleus	30.6	28.55
CDX83398	Canola	cytosol	32.75	28.47
GSMUA_Achr11P...	Banana	cytosol	37.62	27.89
Bra000375.1-P	Field mustard	cytosol	32.94	27.84
AT3G60630.1	Thale cress	cytosol	32.94	27.13
CDY67934	Canola	cytosol	31.58	27.09
CDY56248	Canola	cytosol	31.38	26.79
AT2G45160.1	Thale cress	cytosol	32.94	26.41
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	39.38	26.06
PGSC0003DMT400012104	Potato	plastid	34.31	25.14
Solyc01g090950.2.1	Tomato	cytosol	37.23	24.84
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	37.04	24.74
KRH75351	Soybean	cytosol	35.67	24.6
KRG88927	Soybean	cytosol	35.48	24.43
OQU85680	Sorghum	mitochondrion	30.02	23.8
KRH76167	Soybean	cytosol	33.92	23.61
KRH65380	Soybean	cytosol	33.33	23.36
KXG23028	Sorghum	cytosol	18.52	19.11
OQU92876	Sorghum	cytosol	18.13	16.73

Protein Annotations

MapMan:15.5.12	EntrezGene:8067884	UniProt:C5Z246	EnsemblPlants:EER87695	ProteinID:EER87695	ProteinID:EER87695.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF43	EnsemblPlantsGene:SORBI_3010G003700
unigene:Sbi.2608	InterPro:TF_GRAS	UniParc:UPI0009DC8C20	RefSeq:XP_002436328.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:312524..314071

Molecular Weight (calculated)

54700.2 Da

IEP (calculated)

5.404

GRAVY (calculated)

-0.041

Length

513 amino acids

Sequence
(BLAST)

001: MSELQDDGAG GNGQDETAPA AAFASPAKRL RSRSPASEPT SVLYNRSPSP PTSSSLASSS APEPPPISAE DWEWEAVLDM AAPPAAARSQ DTTSFLRWIM
101: DADAQVDAFD PFLPPPPCQE TAAVEPFLHP QLQLPLPLPV AQEDLDLEPG VAVDELLEAA RRADAGDSAG AREILTRLNH RRLPSMSLPG HPHPPLLRAA
201: AHLRDALLRL LVALPLPHGS SVSTPLDVAL KVAAHRALAD ASPTVQFASF TSTQALLDVL GAARRVHVVD LDVGFGGRWA PLMQELALQW RRAPVSPPPC
301: FKVTALVSPG SAHPLELHLT HEGLTRFAAE LGISFEFNAV AFDPSDPLPP TELSVAPGEA VAVHLPIGSG TPLPTTLRVV KQLRPAIVVC VDDHGCHRGD
401: LPLSHHALNV VRSTAAFLES LDAAGAPADA VARLEQYVLR PRVERLLLGD RMPPWQTMLA SAGFAPLSNA AEAQAECLVS RTPTPGFHVE KRQAALALRW
501: QESELVMVSA WRC

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.