Factsheet for VIT_02s0154g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g078800.1.1	Tomato	plastid	53.32	57.59
Zm00001d022034_P001	Maize	cytosol	30.08	50.33
GSMUA_Achr6P36740_001	Banana	cytosol	44.53	47.8
GSMUA_Achr1P05940_001	Banana	plastid	46.48	45.08
Os10t0551200-01	Rice	cytosol	34.96	44.97
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	61.33	40.52
PGSC0003DMT400012104	Potato	plastid	54.3	39.71
Zm00001d047957_P001	Maize	cytosol	9.96	39.53
Zm00001d035873_P001	Maize	cytosol, plastid	20.9	37.41
Zm00001d027292_P001	Maize	peroxisome	33.98	36.17
GSMUA_Achr11P...	Banana	cytosol	41.02	35.29
Zm00001d022162_P001	Maize	cytosol	10.94	33.94
GSMUA_Achr5P20860_001	Banana	cytosol	36.52	33.75
Zm00001d045589_P001	Maize	cytosol	32.81	33.6
Zm00001d018956_P001	Maize	plastid	9.38	33.57
Os06t0105350-00	Rice	plastid	32.03	33.54
EER87695	Sorghum	cytosol, plastid	33.59	33.53
Os03t0103400-01	Rice	cytosol	30.47	32.91
Zm00001d027569_P001	Maize	plastid	20.12	32.91
GSMUA_Achr8P11160_001	Banana	cytosol	42.38	32.53
TraesCS7D01G011400.1	Wheat	plastid	32.81	31.58
GSMUA_Achr11P...	Banana	cytosol	41.6	30.78
TraesCS5A01G535000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	38.09	30.61
HORVU1Hr1G053510.1	Barley	plastid	36.91	30.48
TraesCS4D01G360200.1	Wheat	cytosol	38.09	30.37
TraesCS4B01G367300.1	Wheat	cytosol	38.09	30.37
TraesCS6B01G277400.1	Wheat	mitochondrion	41.41	30.29
TraesCS1D01G212800.1	Wheat	cytosol	36.72	30.27
TraesCS6D01G229400.1	Wheat	mitochondrion	41.6	30.13
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	36.72	30.08
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	41.21	30.01
TraesCS6A01G247200.1	Wheat	mitochondrion	41.21	29.97
TraesCS1B01G223400.1	Wheat	cytosol, plastid	36.52	29.97
Os04t0555000-01	Rice	cytosol	41.41	29.82
HORVU4Hr1G087700.2	Barley	cytosol, mitochondrion, peroxisome, plastid	37.11	29.78
TraesCS4A01G482000.1	Wheat	plastid	31.45	29.65
Os02t0663100-01	Rice	cytosol	41.02	29.37
Zm00001d026158_P001	Maize	cytosol	41.02	29.25
Os02t0662700-01	Rice	cytosol	40.43	29.2
Zm00001d029855_P001	Maize	mitochondrion	36.72	29.15
EES11245	Sorghum	cytosol, nucleus, peroxisome	40.62	28.89
Zm00001d002718_P001	Maize	cytosol	40.62	28.85
VIT_04s0023g01380.t01	Wine grape	plastid	30.27	28.81
EER91968	Sorghum	cytosol, mitochondrion	35.74	28.59
Zm00001d051387_P001	Maize	cytosol	39.45	28.53
TraesCS7A01G014200.1	Wheat	plastid	32.23	28.4
EES05768	Sorghum	cytosol	39.26	28.07
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	38.09	27.62
Zm00001d042852_P001	Maize	cytosol	12.89	26.83
Zm00001d031615_P001	Maize	cytosol	12.5	23.53
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	16.02	23.16
VIT_18s0001g03310.t01	Wine grape	cytosol	21.68	22.65
OQU85680	Sorghum	mitochondrion	27.93	22.1
VIT_04s0044g00620.t01	Wine grape	cytosol	14.26	18.3

Protein Annotations

EntrezGene:100252271	wikigene:100252271	MapMan:15.5.12	ProteinID:CBI31914	ProteinID:CBI31914.3	UniProt:D7TN41
EMBL:FN596001	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	InterPro:IPR005202	EntrezGene:LOC100252271	wikigene:LOC100252271	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF52	TIGR:TC54857	TIGR:TC63765	InterPro:TF_GRAS	UniParc:UPI0001BE3ACE
ArrayExpress:VIT_02s0154g00400	EnsemblPlantsGene:VIT_02s0154g00400	EnsemblPlants:VIT_02s0154g00400.t01	unigene:Vvi.8095	RefSeq:XP_002266783	RefSeq:XP_002266783.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:5202974..5204864

Molecular Weight (calculated)

58138.7 Da

IEP (calculated)

7.678

GRAVY (calculated)

-0.392

Length

512 amino acids

Sequence
(BLAST)

001: MIYQQQQQQQ QLETPEEKPQ IFNAQPAINH HQRSQNPNYF PVPPYTQQDQ HHLLQPPQAK RHNPGGLDPN SQMPKVPFAD LGHEFLLRRQ QQQPLCFTNQ
101: LQLLPQHQLQ QKPLMLSKQK MVGGGEEMAP QSHHQQQQQQ QQQQQQALLD QLCKAAELVG TGNFSIAQGI LARLNHQLSP EGKPFQRAAF YFKEALQLIL
201: MNNNPAASPP LRSPTPFDVI FKMGAYKVFS DVSPLIQFAN FTCNQALLEA LDDADRIHII DFDIGFGAQW ASFMQELPVR NRGAPSLKIT ALASPSTTHH
301: PLELKLLREN LTLFADEIGI AFELQVVNFD SFDPVSYSMP YFRTSENEAI VVNFPIWSSS NHPAALPLLL RFIKQLSPKL MVSLDRGCDR GDLPLQQHLL
401: HGIQSYTNLL ESLDATNAMT DTVSKIERFL FQPRIESTTL GRLRSPDKMP PWKTLFASAG FTPVSFSNFT ESQADCVVKR TLVRGFHVEK RQALLILCWQ
501: NRELISASAW RC

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.