Factsheet for TraesCS7D01G011400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G054400.1
TraesCS5A01G124000.1
TraesCS5B01G062000.3
TraesCS5B01G123600.1
TraesCS5D01G065700.1
TraesCS5D01G131900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	TraesCS5A01G124000.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5B01G123600.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5D01G131900.1	AT1G72030.1	21798944
AT4G00150.1	TraesCS5A01G054400.1	AT1G60490.1	21798944
AT4G00150.1	TraesCS5B01G062000.3	AT1G60490.1	21798944
AT4G00150.1	TraesCS5D01G065700.1	AT1G60490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G482000.1	Wheat	plastid	94.36	92.45
TraesCS7A01G014200.1	Wheat	plastid	96.8	88.64
Os06t0105350-00	Rice	plastid	63.91	69.53
Zm00001d045589_P001	Maize	cytosol	62.41	66.4
EER87695	Sorghum	cytosol, plastid	63.91	66.28
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	12.41	36.26
GSMUA_Achr11P...	Banana	cytosol	40.41	36.13
TraesCS1D01G212800.1	Wheat	cytosol	42.11	36.07
TraesCS6D01G229400.1	Wheat	mitochondrion	45.49	34.23
GSMUA_Achr5P20860_001	Banana	cytosol	35.15	33.75
TraesCS4D01G360200.1	Wheat	cytosol	40.6	33.64
VIT_02s0154g00400.t01	Wine grape	cytosol	31.58	32.81
GSMUA_Achr8P11160_001	Banana	cytosol	39.47	31.48
CDX95633	Canola	cytosol	32.52	31.23
Solyc08g078800.1.1	Tomato	plastid	27.82	31.22
AT4G00150.1	Thale cress	cytosol, plastid	31.77	30.29
CDY63061	Canola	cytosol, plastid	31.95	30.25
CDY63062	Canola	cytosol, plastid	31.95	30.25
Bra037319.1-P	Field mustard	cytosol, plastid	31.95	30.25
Bra003311.1-P	Field mustard	nucleus	28.76	30.24
CDY48367	Canola	cytosol	31.77	29.96
CDX89065	Canola	nucleus	30.83	29.82
CDX83398	Canola	cytosol	32.52	29.32
GSMUA_Achr11P...	Banana	cytosol	37.97	29.19
Bra000375.1-P	Field mustard	cytosol	32.52	28.5
CDY67934	Canola	cytosol	31.77	28.26
AT3G60630.1	Thale cress	cytosol	32.89	28.09
CDY56248	Canola	cytosol	31.58	27.95
AT2G45160.1	Thale cress	cytosol	32.89	27.34
Solyc01g090950.2.1	Tomato	cytosol	37.97	26.27
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	37.78	26.17
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	37.97	26.06
KRH75351	Soybean	cytosol	35.53	25.4
KRH76167	Soybean	cytosol	34.96	25.24
KRH65380	Soybean	cytosol	34.59	25.14
KRG88927	Soybean	cytosol	35.15	25.1
PGSC0003DMT400012104	Potato	plastid	32.71	24.86
TraesCS4D01G110800.1	Wheat	cytosol	20.68	23.21
TraesCS4D01G216200.1	Wheat	cytosol	20.49	19.43

Protein Annotations

EnsemblPlants:TraesCS7D01G011400.1	EnsemblPlantsGene:TraesCS7D01G011400	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF43
PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:	:

Description

No Description!

Coordinates

chr7D:-:5091235..5093384

Molecular Weight (calculated)

55668.8 Da

IEP (calculated)

6.255

GRAVY (calculated)

-0.115

Length

532 amino acids

Sequence
(BLAST)

001: MSSSSCSGLD GGAAANSKRK SPEPTSVLYN RSPSPPTSSS AHSSEPPPIS AEDWDAVLLS SGGCDDAMAA AAHGTREDSS FLRWIMDAGY ADGDGDAFGF
101: KGPAPFDPSF LPPPPPLHPP EEAAFSLPQL PPQLSLPQHP QQQVHFPVPA SAGAAGGGDG YLEPQAAVDD LLEAARRADA GDPAGAREIL ARLNHRLPSP
201: PAPPGHPPLL RAAALLRDAL LQRLLPPTPA PGSVLSPLDV ALKLAAHKAL ADASPTVQFA GFTATQAFLD ALGAGARRVH VVDLDVGFGG HWPPLMQELA
301: HHWRRTAAPS TPPPALKVTA LVSPGSRHPL ELHLTQESLA RFAAELGIPF EFAAVAFDPF SPSPPPGLSA APDEAVAVHI TVGTETSGPT PASLRVVKQL
401: RPAIVVCVDH GCDRADLPLP SHALNVLRSC AALVESLDNP GASLDVAAKV EQFILRPRAE RLVAGGDKLP PWRSTFASAG LTPLQLSNAA EAQAECLLRR
501: TANHGFHVEK HQSALALWWQ RSELVSVSAW RC

Best Arabidopsis Sequence Match ( AT2G45160.1 )
(BLAST)

001: MPLSFERFQG EGVFGLSSSS FYSDSQKIWS NQDKTEAKQE DLGYVVGGFL PEPTSVLDAL RSPSPLASYS STTTTLSSSH GGGGTTVTNT TVTAGDDNNN
101: NKCSQMGLDD LDGVLSASSP GQEQSILRLI MDPGSAFGVF DPGFGFGSGS GPVSAPVSDN SNLLCNFPFQ EITNPAEALI NPSNHCLFYN PPLSPPAKRF
201: NSGSLHQPVF PLSDPDPGHD PVRRQHQFQF PFYHNNQQQQ FPSSSSSTAV AMVPVPSPGM AGDDQSVIIE QLFNAAELIG TTGNNNGDHT VLAQGILARL
301: NHHLNTSSNH KSPFQRAASH IAEALLSLIH NESSPPLITP ENLILRIAAY RSFSETSPFL QFVNFTANQS ILESCNESGF DRIHIIDFDV GYGGQWSSLM
401: QELASGVGGR RRNRASSLKL TVFAPPPSTV SDEFELRFTE ENLKTFAGEV KIPFEIELLS VELLLNPAYW PLSLRSSEKE AIAVNLPVNS VASGYLPLIL
501: RFLKQLSPNI VVCSDRGCDR NDAPFPNAVI HSLQYHTSLL ESLDANQNQD DSSIERFWVQ PSIEKLLMKR HRWIERSPPW RILFTQCGFS PASLSQMAEA
601: QAECLLQRNP VRGFHVEKRQ SSLVMCWQRK ELVTVSAWKC

Arabidopsis Description

SCL27Scarecrow-like protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJM8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.