Factsheet for Bra037319.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012095.1-P
Bra027152.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00150.1	Bra027152.1-P	AT1G60490.1	21798944
AT4G00150.1	Bra012095.1-P	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63062	Canola	cytosol, plastid	99.82	99.82
CDY63061	Canola	cytosol, plastid	99.64	99.64
AT4G00150.1	Thale cress	cytosol, plastid	74.56	75.09
Zm00001d022034_P001	Maize	cytosol	24.38	44.77
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	13.7	42.31
Bra003311.1-P	Field mustard	nucleus	38.08	42.29
Os10t0551200-01	Rice	cytosol	27.94	39.45
Bra000375.1-P	Field mustard	cytosol	42.35	39.21
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	53.2	38.58
KRH76167	Soybean	cytosol	50.18	38.26
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	52.14	38.15
KRH65380	Soybean	cytosol	49.47	37.98
KRH75351	Soybean	cytosol	50.18	37.9
Solyc01g090950.2.1	Tomato	cytosol	51.78	37.84
GSMUA_Achr5P20860_001	Banana	cytosol	36.48	37.0
KRG88927	Soybean	cytosol	48.93	36.91
GSMUA_Achr6P36740_001	Banana	cytosol	30.78	36.27
GSMUA_Achr11P...	Banana	cytosol	38.08	35.97
GSMUA_Achr1P05940_001	Banana	plastid	33.45	35.61
Zm00001d045589_P001	Maize	cytosol	31.49	35.4
EER87695	Sorghum	cytosol, plastid	31.49	34.5
Zm00001d035873_P001	Maize	cytosol, plastid	17.26	33.92
Os06t0105350-00	Rice	plastid	29.36	33.74
GSMUA_Achr8P11160_001	Banana	cytosol	38.79	32.68
Zm00001d047957_P001	Maize	cytosol	7.47	32.56
Zm00001d027292_P001	Maize	peroxisome	27.76	32.43
TraesCS7D01G011400.1	Wheat	plastid	30.25	31.95
TraesCS1D01G212800.1	Wheat	cytosol	34.52	31.24
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	34.7	31.2
HORVU1Hr1G053510.1	Barley	plastid	34.34	31.13
TraesCS1B01G223400.1	Wheat	cytosol, plastid	34.52	31.09
Os03t0103400-01	Rice	cytosol	26.16	31.01
TraesCS4A01G482000.1	Wheat	plastid	29.89	30.94
GSMUA_Achr11P...	Banana	cytosol	37.9	30.78
EER91968	Sorghum	cytosol, mitochondrion	34.16	30.0
TraesCS6D01G229400.1	Wheat	mitochondrion	37.72	29.99
TraesCS6A01G247200.1	Wheat	mitochondrion	37.54	29.97
TraesCS6B01G277400.1	Wheat	mitochondrion	37.19	29.86
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	37.01	29.59
Os02t0662700-01	Rice	cytosol	37.19	29.48
Zm00001d042852_P001	Maize	cytosol	12.81	29.27
TraesCS7A01G014200.1	Wheat	plastid	30.25	29.26
Zm00001d029855_P001	Maize	mitochondrion	33.45	29.15
Os02t0663100-01	Rice	cytosol	37.01	29.09
Zm00001d002718_P001	Maize	cytosol	37.19	28.99
EES11245	Sorghum	cytosol, nucleus, peroxisome	37.01	28.89
Zm00001d026158_P001	Maize	cytosol	36.83	28.83
Bra028100.1-P	Field mustard	cytosol	25.09	28.72
Os04t0555000-01	Rice	cytosol	36.12	28.55
TraesCS5A01G535000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	32.21	28.41
Zm00001d051387_P001	Maize	cytosol	35.77	28.39
TraesCS4D01G360200.1	Wheat	cytosol	32.21	28.19
TraesCS4B01G367300.1	Wheat	cytosol	32.21	28.19
Zm00001d027569_P001	Maize	plastid	15.48	27.8
EES05768	Sorghum	cytosol	35.41	27.79
HORVU4Hr1G087700.2	Barley	cytosol, mitochondrion, peroxisome, plastid	30.96	27.27
Zm00001d022162_P001	Maize	cytosol	8.01	27.27
Zm00001d018956_P001	Maize	plastid	6.94	27.27
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	33.99	27.05
Zm00001d031615_P001	Maize	cytosol	12.46	25.74
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	14.95	23.73
OQU85680	Sorghum	mitochondrion	24.56	21.33
Bra002894.1-P	Field mustard	cytosol	17.26	20.25
Bra011700.1-P	Field mustard	cytosol	23.67	19.22

Protein Annotations

MapMan:15.5.12	EnsemblPlantsGene:Bra037319	EnsemblPlants:Bra037319.1	EnsemblPlants:Bra037319.1-P	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154	GO:GO:0040007
GO:GO:0048768	GO:GO:0051301	InterPro:IPR005202	UniProt:M4F8A7	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF11	InterPro:TF_GRAS	UniParc:UPI0002541B11	SEG:seg	:

Description

AT4G00150 (E=4e-183) | scarecrow-like transcription factor 6 (SCL6)

Coordinates

chrA09:+:1098688..1100376

Molecular Weight (calculated)

61775.2 Da

IEP (calculated)

6.220

GRAVY (calculated)

-0.138

Length

562 amino acids

Sequence
(BLAST)

001: MPLPFAEFQG KVISSYFSSD IEPTSVLSPL TTSSSTVSSS HGVNAAVGGG GISTAISGGD EQCGASDWER VLPASPTHDH DHDNDQSILR LIMMGDSQDP
101: SLELNNILQT SQSPATFHHS DYTSLGSFGV VVDTTTGFGG LDHSVPALFQ SQVPPQHPVL INQSQTHFTQ NPSLLYGHQI PAAKRLNQGG SVGEGMITEQ
201: LLKVAEVMER GGETSVAQGI LARLNQQLSS PVGKAFERAA FYYIEALHNS LLHNNKASQT PLNPYSLIFK ISAYKSFSEI SPVLQFANFT SNQALLESFH
301: GFTRLHIIDF DIGYGGHWAS LMQELVLLRV DNHAPPLSLK ITVFASPDHH QHQLELAFTQ DNLKHFASEI NISLDIQVLS LDLLASLSWP SSDKEEAVAV
401: NLSPASFSNT PSSLLLRFVK HLSPSIIVCS DRGGCERTDL PFPQQLLHSL QSHAALLESL DAVNANLDAM HKIERFLIQP EIEKLVLDRS RPIQRPMMTW
501: QAMFMQMGFS PVTHSNFTES QAECLVQRTP VRGFHVEKKH NSLLLCWQRT ELVGVSAWRC RS

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.