CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90674
EER96202
KXG24803

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	EER96202	AT1G72030.1	21798944
AT4G00150.1	KXG24803	AT1G60490.1	21798944
AT4G00150.1	EER90674	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	88.69	89.94
OQU85680	Sorghum	mitochondrion	78.63	87.02
Os02t0663100-01	Rice	cytosol	77.37	77.48
TraesCS6A01G247200.1	Wheat	mitochondrion	75.7	76.99
TraesCS6B01G277400.1	Wheat	mitochondrion	75.14	76.86
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	75.14	76.53
TraesCS6D01G229400.1	Wheat	mitochondrion	75.28	76.24
Os02t0662700-01	Rice	cytosol	75.0	75.74
EES11245	Sorghum	cytosol, nucleus, peroxisome	68.58	68.19
GSMUA_Achr11P...	Banana	cytosol	40.5	48.74
GSMUA_Achr5P20860_001	Banana	cytosol	34.78	44.95
EER91968	Sorghum	cytosol, mitochondrion	39.8	44.53
GSMUA_Achr8P11160_001	Banana	cytosol	39.8	42.73
EER87695	Sorghum	cytosol, plastid	29.75	41.52
GSMUA_Achr11P...	Banana	cytosol	38.41	39.74
VIT_02s0154g00400.t01	Wine grape	cytosol	28.07	39.26
AT4G00150.1	Thale cress	cytosol, plastid	29.75	38.17
Solyc08g078800.1.1	Tomato	plastid	23.88	36.08
CDY63061	Canola	cytosol, plastid	27.79	35.41
CDY63062	Canola	cytosol, plastid	27.79	35.41
Bra037319.1-P	Field mustard	cytosol, plastid	27.79	35.41
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	38.13	35.23
Bra003311.1-P	Field mustard	nucleus	24.58	34.78
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	8.8	34.62
CDX95633	Canola	cytosol	26.68	34.48
CDY67934	Canola	cytosol	28.21	33.78
CDY56248	Canola	cytosol	28.35	33.78
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	35.89	33.46
Solyc01g090950.2.1	Tomato	cytosol	35.75	33.29
CDX83398	Canola	cytosol	27.37	33.22
Bra000375.1-P	Field mustard	cytosol	27.93	32.95
KRH75351	Soybean	cytosol	34.22	32.93
KRG88927	Soybean	cytosol	33.8	32.48
AT2G45160.1	Thale cress	cytosol	28.77	32.19
AT3G60630.1	Thale cress	cytosol	27.37	31.46
CDX89065	Canola	nucleus	24.16	31.45
KRH76167	Soybean	cytosol	32.26	31.34
KRH65380	Soybean	cytosol	31.84	31.15
CDY48367	Canola	cytosol	24.44	31.03
PGSC0003DMT400012104	Potato	plastid	30.03	30.71
KXG23028	Sorghum	cytosol	14.8	21.33
OQU92876	Sorghum	cytosol	14.53	18.7

Protein Annotations

MapMan:15.5.12	EntrezGene:8076216	UniProt:C5Y1F5	EnsemblPlants:EES05768	ProteinID:EES05768	ProteinID:EES05768.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF64	EnsemblPlantsGene:SORBI_3004G290800
unigene:Sbi.20431	InterPro:TF_GRAS	UniParc:UPI0001A85F5C	RefSeq:XP_002452792.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:63169784..63172239

Molecular Weight (calculated)

74280.1 Da

IEP (calculated)

6.027

GRAVY (calculated)

-0.016

Length

716 amino acids

Sequence
(BLAST)

001: MRAALFGAQR NGAADLVGGG NTLFWPEEGK AKVLLEPRSV LDCTRSPSPN NSTSTLSSSL GGGGGAADST GGVAAVSDSS AAATAAEATK WGAPGEYGGG
101: GKEDWAGGCE LPPIPTGLNM EVIGGSDSWD AMLGSAAAAG QDQTFLNWII GAAGDLDQSG PPLPVHQQPL LDNVGFGFPA ADPLGFSLDP HLGGVASDMS
201: SPGAVSHATN SAGGGNKASS AFGLFSPESA SLQPPPPPVL FHEGIDTKPP LLGAQPPGLL HQYQHQPTPA TTFFMPIPSF PNHNQQSPLV QPPPKRHQSI
301: GDDLYLARNR LLSPPAGQGH AFPPLNGPAP FQLQPSPPPP HGAMKTTAAE AAQQQLLDEL AAAAKAAEAG NSIGAREILA RLNHQLPPLG KPFLRSASYL
401: KEALLLALAE GHHGGCHLTS PLDVALKLAA YKTFSDHSPV LQFTNFTATQ ALLDEIASST SSCIHVIDFD LGVGGQWASF LQELAHRRGA GGAALPFVKL
501: TAFVSAASHH PLELRLARDN IAQFAADLGI PFGFSAISAD TINPTELISA TGDEVVAVVL PAGCSARAPP LPAILRLVKQ LAPKIVIAID HGADRADLPF
601: SQHFLNCFQS CMFLLDSLDA AGIDADSAGK IEKFLIQPRI EDSVLGRGKV DKPIAWRSAF AGAGFAPVPP SSLAEAQADC LLKRVQVRGF HVEKCGVGLT
701: LYWQRGELVT VSAWRC

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.