CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028526_P001	Maize	cytosol	96.04	94.68
TraesCS4B01G215700.1	Wheat	cytosol	80.22	79.5
TraesCS4A01G088500.1	Wheat	cytosol	80.04	79.32
TraesCS4D01G216200.1	Wheat	cytosol	79.86	79.14
Os03t0263300-01	Rice	cytosol	81.83	79.13
HORVU4Hr1G061310.1	Barley	cytosol, mitochondrion, plastid	80.94	74.26
GSMUA_Achr1P26740_001	Banana	cytosol	55.04	57.84
VIT_18s0001g03310.t01	Wine grape	cytosol	48.56	55.1
KRH53205	Soybean	cytosol	47.12	52.93
KRH64716	Soybean	cytosol	46.76	51.79
PGSC0003DMT400031475	Potato	cytosol	44.96	50.4
Solyc11g013150.1.1	Tomato	cytosol	44.06	50.31
KRH18776	Soybean	cytosol	42.09	49.58
Bra002894.1-P	Field mustard	cytosol	37.59	43.63
CDY45672	Canola	cytosol	37.59	42.74
CDY17336	Canola	cytosol	37.77	42.08
AT4G08250.1	Thale cress	cytosol	35.97	41.41
KXG23028	Sorghum	cytosol	24.46	27.36
EER87695	Sorghum	cytosol, plastid	16.73	18.13
EER91968	Sorghum	cytosol, mitochondrion	18.35	15.94
EES11245	Sorghum	cytosol, nucleus, peroxisome	19.06	14.72
EES05768	Sorghum	cytosol	18.7	14.53
OQU85680	Sorghum	mitochondrion	15.29	13.14

Protein Annotations

EnsemblPlants:OQU92876	EnsemblPlantsGene:SORBI_3001G428600	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:SCL26/NSP2	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF25	PFAM:PF03514	PFscan:PS50985	ProteinID:OQU92876	ProteinID:OQU92876.1
SEG:seg	UniParc:UPI000B8BAA76	UniProt:A0A1Z5SAP1	MapMan:15.5.12	MapMan:26.9.1.6.2	:

Description

hypothetical protein

Coordinates

chr1:-:70751978..70753672

Molecular Weight (calculated)

58851.3 Da

IEP (calculated)

4.774

GRAVY (calculated)

-0.148

Length

556 amino acids

Sequence
(BLAST)

001: MEVTMDDVAG DVEFSGCSST TTSSSSPSLD DGMGMYAWNA LSPVADWGSL CPDDGAQDLH GLIESMLCDD TLLGSADLNP AMFPDDVYYC SNGSAPSSTT
101: TTNPGTPVNG GDAQKGDCHE KGLRLLHLLM AAAEALSGQQ KSRELARMVS HIGDNAAVSN MERLATHFTD ALQGLLDGSH PIGGVGRQAA AAASHGHLPH
201: TGDVLTAFQM LQDMSPYMKF GHFTANQAIL EAVAGDRRVH VVDYDIAEGV QWASLMQAMT SRPDGVPPPH LRITAVSRGG GGGARAVQEA GRRLAAFAAS
301: IGQPFSFGQC RLDSDERFRP ATVRMVKGET LVANCVLNQA AATTTVRRPT GSVASFLAGM ATLGAKVVTV VEEDQGDAEK DDEEVGGFVA RFMEELHRYS
401: AVWDSLEAGF PTQSRVRGLV ERAILAPNIA GAVSRAYRAS DGDGEARAGW GEWMRGNGFR AVPLSCFNHS QARLLLGLFN DGYTMEETSP NKIVLGWKAR
501: RLLSASVWAP PPVSVPSSPT EGAFQPVGMS PTSGGVGRMD FDYIDSFLVE PAYALV

Best Arabidopsis Sequence Match ( AT4G08250.1 )
(BLAST)

001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ

Arabidopsis Description

SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.