CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002894.1-P	Field mustard	cytosol	96.93	98.96
CDY17336	Canola	cytosol	99.59	97.6
AT4G08250.1	Thale cress	cytosol	75.26	76.19
VIT_18s0001g03310.t01	Wine grape	cytosol	53.58	53.47
KRH53205	Soybean	cytosol	52.76	52.12
KRH64716	Soybean	cytosol	52.35	51.0
PGSC0003DMT400031475	Potato	cytosol	50.1	49.4
Solyc11g013150.1.1	Tomato	cytosol	47.85	48.05
KRH18776	Soybean	cytosol	45.19	46.82
GSMUA_Achr1P26740_001	Banana	cytosol	43.97	40.64
Os03t0263300-01	Rice	cytosol	45.4	38.61
TraesCS4D01G216200.1	Wheat	cytosol	44.17	38.5
TraesCS4B01G215700.1	Wheat	cytosol	44.17	38.5
TraesCS4A01G088500.1	Wheat	cytosol	43.97	38.32
OQU92876	Sorghum	cytosol	42.74	37.59
Zm00001d028526_P001	Maize	cytosol	43.15	37.41
HORVU4Hr1G061310.1	Barley	cytosol, mitochondrion, plastid	44.38	35.81
CDX72597	Canola	cytosol	19.43	20.61
CDY13032	Canola	cytosol	19.02	18.86
CDX69238	Canola	cytosol	18.81	18.81
CDY43895	Canola	cytosol	18.81	18.74
CDX75590	Canola	cytosol	18.61	18.69
CDX89065	Canola	nucleus	20.45	18.18
CDY48367	Canola	cytosol	20.25	17.55
CDX95633	Canola	cytosol	19.84	17.51
CDY67934	Canola	cytosol	21.27	17.39
CDY63062	Canola	cytosol, plastid	19.63	17.08
CDY63061	Canola	cytosol, plastid	19.63	17.08
CDY56248	Canola	cytosol	20.86	16.97
CDX83398	Canola	cytosol	19.43	16.1

Protein Annotations

MapMan:15.5.12	MapMan:26.9.1.6.2	GO:A0A078I6E3	UniProt:A0A078I6E3	EnsemblPlants:CDY45672	ProteinID:CDY45672
ProteinID:CDY45672.1	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00082449001	InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF25	InterPro:SCL26/NSP2	InterPro:TF_GRAS	UniParc:UPI0004EE5DD9	SEG:seg

Description

BnaC09g32140DBnaC09g32140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6E3]

Coordinates

chrLK032632:-:190879..192348

Molecular Weight (calculated)

54437.7 Da

IEP (calculated)

5.885

GRAVY (calculated)

-0.146

Length

489 amino acids

Sequence
(BLAST)

001: MHFPFFFITS MTMNPPYDDF PNLLFSNNTA TATSTSSCVE QHDGIISLDM DWDCDFHDLI ESMMSDKGAT TESPPMLPCY HGQEGILNSS STGLSMADEL
101: DHDVEADESK GLRLVHLLVA AADASIGADK TRELTRVLLA KLKDMTSTND RTNMERLAAH FTNGLSKLHK EANVQRQYGP HQHPDVHDRV DVMLAFQMLQ
201: NMSPYINFGY LTATQAILEA VQYERRIHIV DYDITDGVQW PSLMQALVSR NTGPSAQHLR ITALSRATNG KKSVAAVQEA GRRLTAFAES IGQPFSYHHC
301: RMESDTFNPS SLKLVRGEAV VINCVLHLPR FSHQPPNSII SFLSEAKTLN PKLVTLVHEE VGLVGNQGFL YRFMDLLHQF SAIFDSLEAG PARGFVERVI
401: FGPWVSGWLT RIAITAEVES FASWPLWLAT NGFKPVEVSF ANRCQAKLLL SLFNDGYGVE ELGQNGLVLG WKSRRLVSAS FWASCESSE

Best Arabidopsis Sequence Match ( AT4G08250.1 )
(BLAST)

001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ

Arabidopsis Description

SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.