Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G215700.1 | Wheat | cytosol | 90.26 | 97.5 |
| TraesCS4D01G216200.1 | Wheat | cytosol | 90.1 | 97.33 |
| TraesCS4A01G088500.1 | Wheat | cytosol | 89.93 | 97.15 |
| Os03t0263300-01 | Rice | cytosol | 78.22 | 82.43 |
| OQU92876 | Sorghum | cytosol | 74.26 | 80.94 |
| Zm00001d028526_P001 | Maize | cytosol | 74.92 | 80.5 |
| GSMUA_Achr1P26740_001 | Banana | cytosol | 52.15 | 59.74 |
| VIT_18s0001g03310.t01 | Wine grape | cytosol | 45.21 | 55.92 |
| KRH53205 | Soybean | cytosol | 44.39 | 54.34 |
| PGSC0003DMT400031475 | Potato | cytosol | 44.22 | 54.03 |
| Solyc11g013150.1.1 | Tomato | cytosol | 42.57 | 52.98 |
| KRH64716 | Soybean | cytosol | 43.73 | 52.79 |
| KRH18776 | Soybean | cytosol | 40.26 | 51.69 |
| Bra002894.1-P | Field mustard | cytosol | 35.64 | 45.09 |
| CDY45672 | Canola | cytosol | 35.81 | 44.38 |
| CDY17336 | Canola | cytosol | 35.97 | 43.69 |
| AT4G08250.1 | Thale cress | cytosol | 34.32 | 43.06 |
| HORVU4Hr1G020490.26 | Barley | cytosol | 20.46 | 26.16 |
| HORVU4Hr1G087700.2 | Barley | cytosol, mitochondrion, peroxisome, plastid | 18.32 | 17.4 |
| HORVU1Hr1G053510.1 | Barley | plastid | 17.16 | 16.77 |
| HORVU6Hr1G063650.1 | Barley | cytosol, mitochondrion, nucleus, plasma membrane | 18.65 | 16.07 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G061310.1 | EnsemblPlantsGene:HORVU4Hr1G061310 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:SCL26/NSP2 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF25 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | UniParc:UPI000B46540C |
| UniProt:A0A287PA77 | MapMan:15.5.12 | MapMan:26.9.1.6.2 | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:515361930..515364171
Molecular Weight (calculated)
64804.5 Da
IEP (calculated)
5.447
GRAVY (calculated)
-0.229
Length
606 amino acids
Sequence
(BLAST)
(BLAST)
001: SLCTCKICAP CPPLSPRFPR AKTFQRGDKK QHSVTTREGA MDVTMEDVVG DLEISGYSST SISASPSSSL DDGMGLYGWN ALSPVADWGM FCSDDGGHDL
101: HGLIESMLCD DTLIGTPEPD EHPDPAMFTD GPCYSNGSDP SSTTTTNPGT PVQHDDDLPQ DCNPEKGLRL LHLLMAAAEA LSGPHKSREL ARVILVRLKE
201: MVSSTSGNAA ASNMERLAAH FTDALQGLLD GSHSVAGTSR QAASHHHSTG DVLTAFQMLQ DMSPYMKFGH FTANQAILEA VAGDRRVHIV DYDLAEGIQW
301: ASLMQAMTSR PDGVSPPHLR ITAITRSGGG GARAVQEAGR RLAAFAGSIG QPFSFGHCRL DSDERFRPAT VRMVKGETLV ANCILHQAAA TTTVRRPTGS
401: VASFLTGMAS LGAKVVTVVE EEGEAEKNEE EASDAAAGGF VGRFMEELHR YSAVWDSLEA GFPTQSRVRG LVERVILAPN IAGAVSRAYR GADGEGRRGW
501: GEWMRGSGFE MVPLSCFNHS QARLLLGLFN DGYTVEETRP NKIVLGWKAR RLLSASVWAP PPLSVPSSPA EGVCQPMGMA PASGGFGRTE YDYVDSFLVE
601: PAYALV
101: HGLIESMLCD DTLIGTPEPD EHPDPAMFTD GPCYSNGSDP SSTTTTNPGT PVQHDDDLPQ DCNPEKGLRL LHLLMAAAEA LSGPHKSREL ARVILVRLKE
201: MVSSTSGNAA ASNMERLAAH FTDALQGLLD GSHSVAGTSR QAASHHHSTG DVLTAFQMLQ DMSPYMKFGH FTANQAILEA VAGDRRVHIV DYDLAEGIQW
301: ASLMQAMTSR PDGVSPPHLR ITAITRSGGG GARAVQEAGR RLAAFAGSIG QPFSFGHCRL DSDERFRPAT VRMVKGETLV ANCILHQAAA TTTVRRPTGS
401: VASFLTGMAS LGAKVVTVVE EEGEAEKNEE EASDAAAGGF VGRFMEELHR YSAVWDSLEA GFPTQSRVRG LVERVILAPN IAGAVSRAYR GADGEGRRGW
501: GEWMRGSGFE MVPLSCFNHS QARLLLGLFN DGYTVEETRP NKIVLGWKAR RLLSASVWAP PPLSVPSSPA EGVCQPMGMA PASGGFGRTE YDYVDSFLVE
601: PAYALV
001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ
Arabidopsis Description
SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.