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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:
  • plastid 2
  • cytosol 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, peroxisome, plastid
Any Predictor:cytosol, mitochondrion, plastid
iPSORT:plastid
MultiLoc:cytosol
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU5Hr1G013230.1
HORVU5Hr1G039960.1
HORVU6Hr1G023720.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G60630.1 HORVU5Hr1G039960.1 AT1G72030.1 21798944
AT3G60630.1 HORVU6Hr1G023720.1 AT1G72030.1 21798944
AT4G00150.1 HORVU5Hr1G013230.1 AT1G60490.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G535000.1 Wheat cytosol, mitochondrion, peroxisome, plastid 90.91 91.05
TraesCS4D01G360200.1 Wheat cytosol 91.38 90.81
TraesCS4B01G367300.1 Wheat cytosol 90.6 90.03
Zm00001d027292_P001 Maize peroxisome 51.41 68.19
HORVU1Hr1G053510.1 Barley plastid 60.34 62.1
Os03t0103400-01 Rice cytosol 44.98 60.55
GSMUA_Achr11P... Banana cytosol 36.99 39.66
GSMUA_Achr5P20860_001 Banana cytosol 33.54 38.63
HORVU6Hr1G063650.1 Barley cytosol, mitochondrion, nucleus, plasma membrane 40.91 37.13
VIT_02s0154g00400.t01 Wine grape cytosol 29.78 37.11
GSMUA_Achr8P11160_001 Banana cytosol 38.09 36.43
Solyc08g078800.1.1 Tomato plastid 25.71 34.6
GSMUA_Achr11P... Banana cytosol 37.15 34.25
Bra014479.1-P Field mustard cytosol, peroxisome, plastid 9.72 34.07
AT4G00150.1 Thale cress cytosol, plastid 28.84 32.97
CDY63062 Canola cytosol, plastid 27.27 30.96
Bra037319.1-P Field mustard cytosol, plastid 27.27 30.96
CDY63061 Canola cytosol, plastid 27.27 30.96
CDX95633 Canola cytosol 26.65 30.69
Bra003311.1-P Field mustard nucleus 23.98 30.24
Solyc01g090950.2.1 Tomato cytosol 35.89 29.78
PGSC0003DMT400066799 Potato cytosol, nucleus, vacuole 35.58 29.56
CDX83398 Canola cytosol 27.27 29.49
CDX89065 Canola nucleus 25.39 29.45
CDY67934 Canola cytosol 27.59 29.43
VIT_15s0048g00270.t01 Wine grape extracellular, golgi, mitochondrion, nucleus 35.74 29.42
CDY48367 Canola cytosol 25.39 28.72
Bra000375.1-P Field mustard cytosol 27.12 28.5
KRG88927 Soybean cytosol 33.07 28.32
KRH75351 Soybean cytosol 32.92 28.23
CDY56248 Canola cytosol 26.49 28.12
AT3G60630.1 Thale cress cytosol 27.43 28.09
KRH76167 Soybean cytosol 32.45 28.09
KRH65380 Soybean cytosol 31.66 27.6
AT2G45160.1 Thale cress cytosol 27.43 27.34
PGSC0003DMT400012104 Potato plastid 29.47 26.86
HORVU4Hr1G020490.26 Barley cytosol 16.77 22.57
HORVU4Hr1G061310.1 Barley cytosol, mitochondrion, plastid 17.4 18.32
Protein Annotations
EnsemblPlants:HORVU4Hr1G087700.2EnsemblPlantsGene:HORVU4Hr1G087700GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202InterPro:TF_GRASPANTHER:PTHR31636
PANTHER:PTHR31636:SF34PFAM:PF03514PFscan:PS50985SEG:segUniParc:UPI000B472E11UniProt:A0A287Q0R4
MapMan:15.5.12:::::
Description
No Description!
Coordinates
chrchr4H:+:638043201..638045502
Molecular Weight (calculated)
67355.0 Da
IEP (calculated)
6.615
GRAVY (calculated)
-0.083
Length
638 amino acids
Sequence
(BLAST)
001: MPTQQLTTFQ LLPPAHAHAD RYHHHHQQQV ACGGGGGGGH WDPASVLDRR ASPAAHPTLS SSPLPAGVAA LAKNVSAAPP AQAWPPPGPG AEDDAKDDWV
101: HQLPPLDMAG WGDPHAAAMH QPHPTPSSQD TTFLRWIIGG GDDDDNDSGP AMDGDPPDLD LDRITMLPRH HQHHNPPPLL MGGTGHGLPF TLAAEDTKQP
201: FRPSPGAALH QQHHHFSPHT HGGAFPSFDA AEPAKRHPMG GAGPPKLPPF AAGQGAAAAL KPKAEAASDD GAAAAAMDHL TEAARLVEAG DAFGAREILA
301: RLNHRLPAAP AAGTPLLRSA FYFKEALSVA LDATGAHASS ASVASTPVDV LLKLGAYKAF SELSPVLQFA HFTCVQAVLD ELGGAGCIHV LDFDIGVGEQ
401: WASLMQELAQ RRPGAALKVT ALVLPSTHHP LELQLIHENL ANFAAELGVP FQFVVFNLDS VDPTELLAIA GGDAIAVHLP VGSVHAAAVP SVLHLVRRLG
501: AKLVISVDRS GDHGELPFAA HLIQAFKSCV FLLESLDAVG TDSDVASKIE RFLIQPKVES CVVRRHRAAT AGDKLLPWRT MFTSAGFVPV QVSNFAEAQA
601: DSLLKKVPVR GFRVERRAGS LVLHWQRAEL VSVSAWRC
Best Arabidopsis Sequence Match ( AT4G36710.1 )
(BLAST)
001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF
Arabidopsis Description
SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.