Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67934 | Canola | cytosol | 79.84 | 85.45 |
| Bra003311.1-P | Field mustard | nucleus | 67.5 | 85.38 |
| CDY56248 | Canola | cytosol | 79.69 | 84.86 |
| CDX95633 | Canola | cytosol | 71.72 | 82.85 |
| CDX83398 | Canola | cytosol | 75.16 | 81.53 |
| Bra000375.1-P | Field mustard | cytosol | 75.78 | 79.9 |
| AT3G60630.1 | Thale cress | cytosol | 62.5 | 64.21 |
| AT4G00150.1 | Thale cress | cytosol, plastid | 41.09 | 47.13 |
| Zm00001d022034_P001 | Maize | cytosol | 19.53 | 40.85 |
| VIT_15s0048g00270.t01 | Wine grape | extracellular, golgi, mitochondrion, nucleus | 46.88 | 38.71 |
| GSMUA_Achr6P36740_001 | Banana | cytosol | 27.81 | 37.32 |
| KRG88927 | Soybean | cytosol | 43.28 | 37.18 |
| KRH76167 | Soybean | cytosol | 42.34 | 36.77 |
| KRH75351 | Soybean | cytosol | 42.66 | 36.69 |
| PGSC0003DMT400066799 | Potato | cytosol, nucleus, vacuole | 43.91 | 36.59 |
| Os10t0551200-01 | Rice | cytosol | 22.66 | 36.43 |
| Solyc01g090950.2.1 | Tomato | cytosol | 43.75 | 36.41 |
| KRH65380 | Soybean | cytosol | 41.41 | 36.2 |
| GSMUA_Achr1P05940_001 | Banana | plastid | 29.38 | 35.61 |
| GSMUA_Achr5P20860_001 | Banana | cytosol | 30.31 | 35.02 |
| GSMUA_Achr11P... | Banana | cytosol | 32.5 | 34.96 |
| Zm00001d047957_P001 | Maize | cytosol | 6.88 | 34.11 |
| Zm00001d045589_P001 | Maize | cytosol | 26.56 | 34.0 |
| Os06t0105350-00 | Rice | plastid | 25.94 | 33.95 |
| EER87695 | Sorghum | cytosol, plastid | 26.41 | 32.94 |
| TraesCS7D01G011400.1 | Wheat | plastid | 27.34 | 32.89 |
| TraesCS4A01G482000.1 | Wheat | plastid | 27.19 | 32.04 |
| GSMUA_Achr8P11160_001 | Banana | cytosol | 32.81 | 31.48 |
| Zm00001d035873_P001 | Maize | cytosol, plastid | 13.91 | 31.12 |
| Zm00001d027292_P001 | Maize | peroxisome | 23.12 | 30.77 |
| Os03t0103400-01 | Rice | cytosol | 22.5 | 30.38 |
| TraesCS7A01G014200.1 | Wheat | plastid | 27.34 | 30.12 |
| TraesCS6D01G229400.1 | Wheat | mitochondrion | 32.97 | 29.84 |
| TraesCS6B01G277400.1 | Wheat | mitochondrion | 32.5 | 29.71 |
| TraesCS6A01G247200.1 | Wheat | mitochondrion | 32.66 | 29.69 |
| EES11245 | Sorghum | cytosol, nucleus, peroxisome | 33.28 | 29.58 |
| Zm00001d002718_P001 | Maize | cytosol | 33.28 | 29.54 |
| Os04t0555000-01 | Rice | cytosol | 32.81 | 29.54 |
| HORVU1Hr1G053510.1 | Barley | plastid | 28.59 | 29.52 |
| HORVU6Hr1G063650.1 | Barley | cytosol, mitochondrion, nucleus, plasma membrane | 32.19 | 29.3 |
| Zm00001d051387_P001 | Maize | cytosol | 32.34 | 29.24 |
| Os02t0662700-01 | Rice | cytosol | 32.34 | 29.2 |
| TraesCS1D01G212800.1 | Wheat | cytosol | 28.28 | 29.15 |
| TraesCS1A01G209400.1 | Wheat | mitochondrion, plastid | 28.44 | 29.12 |
| Zm00001d026158_P001 | Maize | cytosol | 32.66 | 29.11 |
| TraesCS1B01G223400.1 | Wheat | cytosol, plastid | 28.28 | 29.01 |
| Os02t0663100-01 | Rice | cytosol | 32.34 | 28.95 |
| EES05768 | Sorghum | cytosol | 32.19 | 28.77 |
| GSMUA_Achr11P... | Banana | cytosol | 31.09 | 28.76 |
| AT4G36710.1 | Thale cress | cytosol | 21.56 | 28.4 |
| TraesCS5A01G535000.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 28.12 | 28.26 |
| EER91968 | Sorghum | cytosol, mitochondrion | 28.12 | 28.12 |
| TraesCS4B01G367300.1 | Wheat | cytosol | 28.12 | 28.04 |
| TraesCS4D01G360200.1 | Wheat | cytosol | 27.97 | 27.88 |
| HORVU4Hr1G087700.2 | Barley | cytosol, mitochondrion, peroxisome, plastid | 27.34 | 27.43 |
| Zm00001d029855_P001 | Maize | mitochondrion | 27.5 | 27.29 |
| Zm00001d018956_P001 | Maize | plastid | 6.09 | 27.27 |
| Zm00001d017513_P001 | Maize | cytosol, mitochondrion, nucleus | 30.0 | 27.2 |
| Zm00001d027569_P001 | Maize | plastid | 12.66 | 25.88 |
| Zm00001d042852_P001 | Maize | cytosol | 9.38 | 24.39 |
| Zm00001d022162_P001 | Maize | cytosol | 6.09 | 23.64 |
| OQU85680 | Sorghum | mitochondrion | 23.12 | 22.87 |
| AT4G08250.1 | Thale cress | cytosol | 16.41 | 21.74 |
| Zm00001d031615_P001 | Maize | cytosol | 9.06 | 21.32 |
| Zm00001d002023_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 11.72 | 21.19 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:819124 | UniProt:A0A178VMD3 | ProteinID:AEC10518.1 | ArrayExpress:AT2G45160 | EnsemblPlantsGene:AT2G45160 |
| RefSeq:AT2G45160 | TAIR:AT2G45160 | RefSeq:AT2G45160-TAIR-G | EnsemblPlants:AT2G45160.1 | TAIR:AT2G45160.1 | UniProt:B7ZWR8 |
| EMBL:BT004053 | EMBL:BT020591 | EMBL:BT053760 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030154 |
| GO:GO:0040007 | GO:GO:0043565 | GO:GO:0048768 | GO:GO:0051301 | Symbol:HAM1 | InterPro:IPR005202 |
| RefSeq:NP_182041.1 | ProteinID:OAP07640.1 | PFAM:PF03514 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000017 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009049 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0020148 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF11 |
| UniProt:Q7XJM8 | InterPro:TF_GRAS | UniParc:UPI0000162422 | SEG:seg | : | : |
Description
SCL27Scarecrow-like protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJM8]
Coordinates
chr2:-:18617862..18620451
Molecular Weight (calculated)
70209.4 Da
IEP (calculated)
5.435
GRAVY (calculated)
-0.285
Length
640 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLSFERFQG EGVFGLSSSS FYSDSQKIWS NQDKTEAKQE DLGYVVGGFL PEPTSVLDAL RSPSPLASYS STTTTLSSSH GGGGTTVTNT TVTAGDDNNN
101: NKCSQMGLDD LDGVLSASSP GQEQSILRLI MDPGSAFGVF DPGFGFGSGS GPVSAPVSDN SNLLCNFPFQ EITNPAEALI NPSNHCLFYN PPLSPPAKRF
201: NSGSLHQPVF PLSDPDPGHD PVRRQHQFQF PFYHNNQQQQ FPSSSSSTAV AMVPVPSPGM AGDDQSVIIE QLFNAAELIG TTGNNNGDHT VLAQGILARL
301: NHHLNTSSNH KSPFQRAASH IAEALLSLIH NESSPPLITP ENLILRIAAY RSFSETSPFL QFVNFTANQS ILESCNESGF DRIHIIDFDV GYGGQWSSLM
401: QELASGVGGR RRNRASSLKL TVFAPPPSTV SDEFELRFTE ENLKTFAGEV KIPFEIELLS VELLLNPAYW PLSLRSSEKE AIAVNLPVNS VASGYLPLIL
501: RFLKQLSPNI VVCSDRGCDR NDAPFPNAVI HSLQYHTSLL ESLDANQNQD DSSIERFWVQ PSIEKLLMKR HRWIERSPPW RILFTQCGFS PASLSQMAEA
601: QAECLLQRNP VRGFHVEKRQ SSLVMCWQRK ELVTVSAWKC
101: NKCSQMGLDD LDGVLSASSP GQEQSILRLI MDPGSAFGVF DPGFGFGSGS GPVSAPVSDN SNLLCNFPFQ EITNPAEALI NPSNHCLFYN PPLSPPAKRF
201: NSGSLHQPVF PLSDPDPGHD PVRRQHQFQF PFYHNNQQQQ FPSSSSSTAV AMVPVPSPGM AGDDQSVIIE QLFNAAELIG TTGNNNGDHT VLAQGILARL
301: NHHLNTSSNH KSPFQRAASH IAEALLSLIH NESSPPLITP ENLILRIAAY RSFSETSPFL QFVNFTANQS ILESCNESGF DRIHIIDFDV GYGGQWSSLM
401: QELASGVGGR RRNRASSLKL TVFAPPPSTV SDEFELRFTE ENLKTFAGEV KIPFEIELLS VELLLNPAYW PLSLRSSEKE AIAVNLPVNS VASGYLPLIL
501: RFLKQLSPNI VVCSDRGCDR NDAPFPNAVI HSLQYHTSLL ESLDANQNQD DSSIERFWVQ PSIEKLLMKR HRWIERSPPW RILFTQCGFS PASLSQMAEA
601: QAECLLQRNP VRGFHVEKRQ SSLVMCWQRK ELVTVSAWKC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.