Factsheet for Zm00001d017513_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013027_P002
Zm00001d019343_P001
Zm00001d034575_P001
Zm00001d050219_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	Zm00001d019343_P001	AT1G72030.1	21798944
AT4G00150.1	Zm00001d050219_P004	AT1G60490.1	21798944
AT4G00150.1	Zm00001d013027_P002	AT5G66720.1	21798944
AT4G00150.1	Zm00001d034575_P001	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05768	Sorghum	cytosol	89.94	88.69
Zm00001d051387_P001	Maize	cytosol	88.81	88.56
Zm00001d022034_P001	Maize	cytosol	31.73	73.2
Os02t0663100-01	Rice	cytosol	73.65	72.73
TraesCS6B01G277400.1	Wheat	mitochondrion	71.53	72.14
TraesCS6A01G247200.1	Wheat	mitochondrion	71.81	72.02
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	71.39	71.69
TraesCS6D01G229400.1	Wheat	mitochondrion	71.53	71.43
Os02t0662700-01	Rice	cytosol	71.25	70.94
Zm00001d002718_P001	Maize	cytosol	66.71	65.33
Zm00001d026158_P001	Maize	cytosol	65.44	64.35
GSMUA_Achr11P...	Banana	cytosol	39.94	47.4
Zm00001d027292_P001	Maize	peroxisome	30.17	44.28
Zm00001d035873_P001	Maize	cytosol, plastid	17.71	43.71
GSMUA_Achr5P20860_001	Banana	cytosol	33.99	43.32
Zm00001d022162_P001	Maize	cytosol	9.92	42.42
Zm00001d029855_P001	Maize	mitochondrion	38.39	42.02
GSMUA_Achr8P11160_001	Banana	cytosol	39.09	41.38
Zm00001d047957_P001	Maize	cytosol	7.51	41.09
Zm00001d045589_P001	Maize	cytosol	28.33	40.0
GSMUA_Achr11P...	Banana	cytosol	38.67	39.45
Zm00001d042852_P001	Maize	cytosol	13.6	39.02
VIT_02s0154g00400.t01	Wine grape	cytosol	27.62	38.09
Zm00001d027569_P001	Maize	plastid	16.01	36.1
AT4G00150.1	Thale cress	cytosol, plastid	28.05	35.48
Solyc08g078800.1.1	Tomato	plastid	23.8	35.44
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	17.56	35.03
Zm00001d018956_P001	Maize	plastid	7.08	34.97
Zm00001d031615_P001	Maize	cytosol	13.17	34.19
Bra037319.1-P	Field mustard	cytosol, plastid	27.05	33.99
CDY63062	Canola	cytosol, plastid	27.05	33.99
CDY63061	Canola	cytosol, plastid	27.05	33.99
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	36.4	33.16
Bra003311.1-P	Field mustard	nucleus	23.51	32.81
CDX95633	Canola	cytosol	25.21	32.13
KRH75351	Soybean	cytosol	33.57	31.85
KRG88927	Soybean	cytosol	33.43	31.68
CDY56248	Canola	cytosol	26.91	31.61
CDY67934	Canola	cytosol	26.63	31.44
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	34.14	31.38
Solyc01g090950.2.1	Tomato	cytosol	33.99	31.21
CDX83398	Canola	cytosol	26.06	31.19
Bra000375.1-P	Field mustard	cytosol	26.49	30.81
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	7.93	30.77
AT2G45160.1	Thale cress	cytosol	27.2	30.0
KRH65380	Soybean	cytosol	30.88	29.78
PGSC0003DMT400012104	Potato	plastid	29.46	29.71
KRH76167	Soybean	cytosol	30.88	29.58
CDX89065	Canola	nucleus	22.66	29.09
AT3G60630.1	Thale cress	cytosol	25.5	28.89
CDY48367	Canola	cytosol	22.95	28.72
Zm00001d053163_P001	Maize	cytosol	16.15	24.1
Zm00001d041919_P001	Maize	cytosol, peroxisome, plastid	14.59	20.93
Zm00001d028526_P001	Maize	cytosol	14.31	17.91

Protein Annotations

EnsemblPlants:Zm00001d017513_P001	EnsemblPlants:Zm00001d017513_T001	EnsemblPlantsGene:Zm00001d017513	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF64	PFAM:PF03514	PFscan:PS50985	ProteinID:AQK73326.1	SEG:seg
UniParc:UPI000843ACB1	UniProt:A0A1D6HFA6	MapMan:15.5.12	:	:	:

Description

GRAS-transcription factor 10Scarecrow-like protein 6

Coordinates

chr5:+:198244236..198246356

Molecular Weight (calculated)

73965.8 Da

IEP (calculated)

5.696

GRAVY (calculated)

0.001

Length

706 amino acids

Sequence
(BLAST)

001: MRAALFGAQR NGAADPIGGG KTLFWPEGKA KTLLEPWSVL DCTRSPSNST STLSSSLGSG AEDSTGVAVV SDRSAAAEAT KWGAPGEHGG GGGKEDWAGG
101: CELPPIPTGL DMGVVVADSW DAMLGNAAAA AQDQTFLNWF IGAAGDLDQS GPPLPVHHQP LLDNVGFGFP AADPLGFTLD PHLGGVASDM SSPGAVSQTT
201: NSGGGGNKAS SAFGLLSPES ASFQPPPLPV LFHEGIDTKP PLDTQSPGLL HQYQHQPTPA TTFLMSIPSF PSYNQQSPLV HPPAKRHQSI GGDLYLARTR
301: LLPPPPTGQG HAFPPLNGPA PFQLQPSPPL PHGAMKRTAA EAAQQQLLDE LAAAAKAAEA GNSIGARAIL ARLNHQLPPL GKPFLRSASY LKEALLALAE
401: GHHGGCHLKS PLDVALKLAA YKTFSDHSPV LQFTNFTATQ ALLDEIGGST SSCIHVIDFD LGVGGQWASF LQELAHCRGA GGAALPFVKL TAFVSAASHH
501: PLELCLARDN IAQFAVDLGI PFEFSAISAD MINPAEFISA TDDEDVVVVL PTGCSARAPP LPAILGLVKQ LAPKIVIAID HGADRADLPF SQYFLNCFQS
601: CMFLLDSLDA AGIDADSACK IEKFLIQPRI EDSVLGRGKV DNPIAWRSAF AAARFVPVPP SNWAEAEADC LLKRVQVHGF HVEKCGVGLT LYWQHGELVT
701: VSAWRC

Best Arabidopsis Sequence Match ( AT4G36710.1 )
(BLAST)

001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF

Arabidopsis Description

SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.