Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013027_P002 | |
| Zm00001d019343_P001 | |
| Zm00001d034575_P001 | |
| Zm00001d050219_P004 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017513_P001 | Maize | cytosol, mitochondrion, nucleus | 88.56 | 88.81 |
| OQU85680 | Sorghum | mitochondrion | 75.14 | 82.23 |
| TraesCS6B01G277400.1 | Wheat | mitochondrion | 75.71 | 76.57 |
| TraesCS6A01G247200.1 | Wheat | mitochondrion | 75.99 | 76.42 |
| HORVU6Hr1G063650.1 | Barley | cytosol, mitochondrion, nucleus, plasma membrane | 75.71 | 76.24 |
| Os02t0663100-01 | Rice | cytosol | 76.98 | 76.22 |
| Zm00001d022034_P001 | Maize | cytosol | 32.77 | 75.82 |
| TraesCS6D01G229400.1 | Wheat | mitochondrion | 75.71 | 75.81 |
| Os02t0662700-01 | Rice | cytosol | 74.72 | 74.61 |
| Zm00001d002718_P001 | Maize | cytosol | 68.93 | 67.68 |
| Zm00001d026158_P001 | Maize | cytosol | 65.96 | 65.04 |
| GSMUA_Achr11P... | Banana | cytosol | 40.4 | 48.07 |
| Zm00001d035873_P001 | Maize | cytosol, plastid | 18.93 | 46.85 |
| Zm00001d027292_P001 | Maize | peroxisome | 31.64 | 46.57 |
| Zm00001d047957_P001 | Maize | cytosol | 8.33 | 45.74 |
| Zm00001d022162_P001 | Maize | cytosol | 10.45 | 44.85 |
| Zm00001d029855_P001 | Maize | mitochondrion | 40.11 | 44.03 |
| GSMUA_Achr5P20860_001 | Banana | cytosol | 33.76 | 43.14 |
| Zm00001d042852_P001 | Maize | cytosol | 14.69 | 42.28 |
| Zm00001d045589_P001 | Maize | cytosol | 29.8 | 42.2 |
| GSMUA_Achr8P11160_001 | Banana | cytosol | 38.98 | 41.38 |
| VIT_02s0154g00400.t01 | Wine grape | cytosol | 28.53 | 39.45 |
| Zm00001d018956_P001 | Maize | plastid | 7.91 | 39.16 |
| GSMUA_Achr11P... | Banana | cytosol | 38.14 | 39.02 |
| Zm00001d027569_P001 | Maize | plastid | 16.95 | 38.34 |
| AT4G00150.1 | Thale cress | cytosol, plastid | 29.8 | 37.81 |
| Zm00001d002023_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 18.64 | 37.29 |
| Zm00001d031615_P001 | Maize | cytosol | 14.27 | 37.13 |
| Bra037319.1-P | Field mustard | cytosol, plastid | 28.39 | 35.77 |
| CDY63061 | Canola | cytosol, plastid | 28.39 | 35.77 |
| CDY63062 | Canola | cytosol, plastid | 28.39 | 35.77 |
| Solyc08g078800.1.1 | Tomato | plastid | 23.87 | 35.65 |
| Bra003311.1-P | Field mustard | nucleus | 25.0 | 34.98 |
| VIT_15s0048g00270.t01 | Wine grape | extracellular, golgi, mitochondrion, nucleus | 37.99 | 34.71 |
| CDX95633 | Canola | cytosol | 27.12 | 34.66 |
| Bra014479.1-P | Field mustard | cytosol, peroxisome, plastid | 8.9 | 34.62 |
| CDY56248 | Canola | cytosol | 28.81 | 33.94 |
| CDY67934 | Canola | cytosol | 28.53 | 33.78 |
| CDX83398 | Canola | cytosol | 27.82 | 33.39 |
| KRH75351 | Soybean | cytosol | 34.46 | 32.8 |
| Bra000375.1-P | Field mustard | cytosol | 28.11 | 32.78 |
| KRG88927 | Soybean | cytosol | 34.32 | 32.62 |
| AT2G45160.1 | Thale cress | cytosol | 29.24 | 32.34 |
| Solyc01g090950.2.1 | Tomato | cytosol | 35.03 | 32.25 |
| PGSC0003DMT400066799 | Potato | cytosol, nucleus, vacuole | 34.89 | 32.16 |
| KRH76167 | Soybean | cytosol | 32.91 | 31.61 |
| KRH65380 | Soybean | cytosol | 32.49 | 31.42 |
| CDX89065 | Canola | nucleus | 24.29 | 31.27 |
| AT3G60630.1 | Thale cress | cytosol | 27.26 | 30.98 |
| CDY48367 | Canola | cytosol | 24.58 | 30.85 |
| PGSC0003DMT400012104 | Potato | plastid | 29.8 | 30.14 |
| Zm00001d053163_P001 | Maize | cytosol | 16.38 | 24.52 |
| Zm00001d041919_P001 | Maize | cytosol, peroxisome, plastid | 15.25 | 21.95 |
| Zm00001d028526_P001 | Maize | cytosol | 15.11 | 18.97 |
Protein Annotations
| EMBL:BT063504 | EMBL:KJ727939 | EnsemblPlants:Zm00001d051387_P001 | EnsemblPlants:Zm00001d051387_T001 | EnsemblPlantsGene:Zm00001d051387 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF64 | PFAM:PF03514 | PFscan:PS50985 |
| ProteinID:AQK54122.1 | SEG:seg | UniParc:UPI0001949054 | UniProt:C0P5D5 | MapMan:15.5.12 | : |
Description
GRAS-transcription factor 80Scarecrow-like protein 6
Coordinates
chr4:+:156767880..156770006
Molecular Weight (calculated)
73946.1 Da
IEP (calculated)
5.955
GRAVY (calculated)
0.004
Length
708 amino acids
Sequence
(BLAST)
(BLAST)
001: MRAALFGAER NGAADLVGDG KTLFWPEGKA KVLLEPRSVL DCTRSLSPNN STSTLSSSVG GGAADSTGMA VASDSSAAAE ATKWGAPGEH GGGGKEDWAG
101: GCELPPIPTG LDMGVGGGDS WDAMLGNAAA AGQDQTFLNW IIGAAGDLDQ PGPPLPVHQQ PLLDNVGFGF PAADPLGFTL DPHLCGLACD MSSPGAVSHT
201: TNSSGGGNKA SSAFGLFSPE SASLQPPPPP VLFHEGIDTK PPLLGAQLPG LLHQYQHQPT PGTTFFMPIP SFPDPNQRSP LIQPPPKRPQ SIGDDLYLAR
301: NRLLPPPAGQ GHAFPPLNGP SPFQLQPSPP LSHGAMKTTA AEAAQQQLLD ELAAAAKAAE AGNSIGAREI LARLNHQLPL LGKPFLRSAS YLKEALLLAL
401: AEGHHGGCHL TSPLDVALKL AAYKTFSDHS PVLQFTNFTA TQALIDEIAR STSSCIHVID FDLGVGGQWA SFLQELAHRR GAGGAALPSV KLTAFVSAAS
501: HHPLELRLTR DNIAQFAADL GIPFQFSAIS ADTINPAELV SATADEVVAV VLPVGCSARA PPLPAILRLV KQLAPKIVIA IDHGADRADL PFSQHFLNCF
601: QSCMFLLDSL DAAGIDADST CKIEKFLIQP RIEDAVLGRG KVDKPIAWRS AFAAAGFAPV PPSNLAEAQA DCLLKRVQVR GFHVEKCGVG LTLYWQCGEL
701: VTVSAWRC
101: GCELPPIPTG LDMGVGGGDS WDAMLGNAAA AGQDQTFLNW IIGAAGDLDQ PGPPLPVHQQ PLLDNVGFGF PAADPLGFTL DPHLCGLACD MSSPGAVSHT
201: TNSSGGGNKA SSAFGLFSPE SASLQPPPPP VLFHEGIDTK PPLLGAQLPG LLHQYQHQPT PGTTFFMPIP SFPDPNQRSP LIQPPPKRPQ SIGDDLYLAR
301: NRLLPPPAGQ GHAFPPLNGP SPFQLQPSPP LSHGAMKTTA AEAAQQQLLD ELAAAAKAAE AGNSIGAREI LARLNHQLPL LGKPFLRSAS YLKEALLLAL
401: AEGHHGGCHL TSPLDVALKL AAYKTFSDHS PVLQFTNFTA TQALIDEIAR STSSCIHVID FDLGVGGQWA SFLQELAHRR GAGGAALPSV KLTAFVSAAS
501: HHPLELRLTR DNIAQFAADL GIPFQFSAIS ADTINPAELV SATADEVVAV VLPVGCSARA PPLPAILRLV KQLAPKIVIA IDHGADRADL PFSQHFLNCF
601: QSCMFLLDSL DAAGIDADST CKIEKFLIQP RIEDAVLGRG KVDKPIAWRS AFAAAGFAPV PPSNLAEAQA DCLLKRVQVR GFHVEKCGVG LTLYWQCGEL
701: VTVSAWRC
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.