Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75351 | Soybean | cytosol | 93.69 | 93.82 |
| VIT_15s0048g00270.t01 | Wine grape | extracellular, golgi, mitochondrion, nucleus | 57.32 | 55.1 |
| KRH76167 | Soybean | cytosol | 53.69 | 54.27 |
| KRH65380 | Soybean | cytosol | 53.15 | 54.1 |
| AT4G00150.1 | Thale cress | cytosol, plastid | 38.26 | 51.08 |
| PGSC0003DMT400066799 | Potato | cytosol, nucleus, vacuole | 50.87 | 49.35 |
| Solyc01g090950.2.1 | Tomato | cytosol | 50.87 | 49.28 |
| Bra037319.1-P | Field mustard | cytosol, plastid | 36.91 | 48.93 |
| CDY63061 | Canola | cytosol, plastid | 36.91 | 48.93 |
| CDY63062 | Canola | cytosol, plastid | 36.91 | 48.93 |
| Bra003311.1-P | Field mustard | nucleus | 32.21 | 47.43 |
| CDX95633 | Canola | cytosol | 34.36 | 46.21 |
| Zm00001d022034_P001 | Maize | cytosol | 18.93 | 46.08 |
| CDX89065 | Canola | nucleus | 33.96 | 46.0 |
| CDY48367 | Canola | cytosol | 33.96 | 44.86 |
| CDX83398 | Canola | cytosol | 35.17 | 44.41 |
| CDY67934 | Canola | cytosol | 35.44 | 44.15 |
| CDY56248 | Canola | cytosol | 35.57 | 44.09 |
| AT3G60630.1 | Thale cress | cytosol | 36.78 | 43.98 |
| Bra014479.1-P | Field mustard | cytosol, peroxisome, plastid | 10.74 | 43.96 |
| AT2G45160.1 | Thale cress | cytosol | 37.18 | 43.28 |
| Bra000375.1-P | Field mustard | cytosol | 34.63 | 42.5 |
| GSMUA_Achr6P36740_001 | Banana | cytosol | 27.11 | 42.35 |
| Os10t0551200-01 | Rice | cytosol | 22.28 | 41.71 |
| GSMUA_Achr11P... | Banana | cytosol | 33.02 | 41.34 |
| GSMUA_Achr5P20860_001 | Banana | cytosol | 30.74 | 41.34 |
| GSMUA_Achr1P05940_001 | Banana | plastid | 28.99 | 40.91 |
| Zm00001d027292_P001 | Maize | peroxisome | 24.97 | 38.67 |
| GSMUA_Achr8P11160_001 | Banana | cytosol | 33.15 | 37.03 |
| Zm00001d047957_P001 | Maize | cytosol | 6.31 | 36.43 |
| Zm00001d035873_P001 | Maize | cytosol, plastid | 13.96 | 36.36 |
| HORVU1Hr1G053510.1 | Barley | plastid | 30.07 | 36.13 |
| Zm00001d045589_P001 | Maize | cytosol | 24.16 | 36.0 |
| TraesCS6D01G229400.1 | Wheat | mitochondrion | 34.09 | 35.93 |
| TraesCS1D01G212800.1 | Wheat | cytosol | 29.93 | 35.91 |
| TraesCS6A01G247200.1 | Wheat | mitochondrion | 33.83 | 35.8 |
| TraesCS6B01G277400.1 | Wheat | mitochondrion | 33.56 | 35.71 |
| Os02t0662700-01 | Rice | cytosol | 33.96 | 35.68 |
| TraesCS1A01G209400.1 | Wheat | mitochondrion, plastid | 29.93 | 35.68 |
| TraesCS1B01G223400.1 | Wheat | cytosol, plastid | 29.8 | 35.58 |
| HORVU6Hr1G063650.1 | Barley | cytosol, mitochondrion, nucleus, plasma membrane | 33.56 | 35.56 |
| EER87695 | Sorghum | cytosol, plastid | 24.43 | 35.48 |
| Os06t0105350-00 | Rice | plastid | 23.09 | 35.17 |
| Os04t0555000-01 | Rice | cytosol | 33.56 | 35.16 |
| TraesCS7D01G011400.1 | Wheat | plastid | 25.1 | 35.15 |
| GSMUA_Achr11P... | Banana | cytosol | 32.62 | 35.12 |
| EES11245 | Sorghum | cytosol, nucleus, peroxisome | 33.56 | 34.72 |
| Os02t0663100-01 | Rice | cytosol | 33.29 | 34.69 |
| Zm00001d002718_P001 | Maize | cytosol | 33.42 | 34.54 |
| Zm00001d051387_P001 | Maize | cytosol | 32.62 | 34.32 |
| Zm00001d026158_P001 | Maize | cytosol | 33.02 | 34.26 |
| TraesCS4A01G482000.1 | Wheat | plastid | 24.83 | 34.07 |
| TraesCS5A01G535000.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 29.13 | 34.07 |
| Os03t0103400-01 | Rice | cytosol | 21.61 | 33.97 |
| TraesCS4B01G367300.1 | Wheat | cytosol | 29.13 | 33.8 |
| TraesCS4D01G360200.1 | Wheat | cytosol | 29.13 | 33.8 |
| EES05768 | Sorghum | cytosol | 32.48 | 33.8 |
| Zm00001d029855_P001 | Maize | mitochondrion | 29.26 | 33.8 |
| EER91968 | Sorghum | cytosol, mitochondrion | 28.72 | 33.44 |
| Zm00001d017513_P001 | Maize | cytosol, mitochondrion, nucleus | 31.68 | 33.43 |
| HORVU4Hr1G087700.2 | Barley | cytosol, mitochondrion, peroxisome, plastid | 28.32 | 33.07 |
| Zm00001d022162_P001 | Maize | cytosol | 7.25 | 32.73 |
| TraesCS7A01G014200.1 | Wheat | plastid | 24.97 | 32.01 |
| Zm00001d018956_P001 | Maize | plastid | 5.91 | 30.77 |
| Zm00001d042852_P001 | Maize | cytosol | 9.8 | 29.67 |
| Zm00001d027569_P001 | Maize | plastid | 12.35 | 29.39 |
| OQU85680 | Sorghum | mitochondrion | 25.37 | 29.21 |
| KRH69945 | Soybean | plastid | 20.0 | 28.49 |
| KRH28630 | Soybean | plastid | 19.73 | 28.49 |
| KRH76844 | Soybean | plastid | 19.73 | 28.0 |
| KRH08304 | Soybean | plastid | 20.13 | 27.78 |
| Zm00001d002023_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 12.62 | 26.55 |
| Zm00001d031615_P001 | Maize | cytosol | 9.66 | 26.47 |
| KRH18776 | Soybean | cytosol | 16.11 | 25.42 |
| KRH53205 | Soybean | cytosol | 15.97 | 24.04 |
| KRH64716 | Soybean | cytosol | 15.44 | 22.91 |
| KRH43393 | Soybean | cytosol | 13.56 | 20.74 |
Protein Annotations
| EntrezGene:100805945 | MapMan:15.5.12 | EnsemblPlantsGene:GLYMA_U013800 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030154 |
| GO:GO:0040007 | GO:GO:0043565 | GO:GO:0048768 | GO:GO:0051301 | UniProt:I1LKI6 | InterPro:IPR005202 |
| EnsemblPlants:KRG88927 | ProteinID:KRG88927 | ProteinID:KRG88927.1 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF11 | InterPro:TF_GRAS | UniParc:UPI000294B070 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chrscaffold_21:-:1245738..1248776
Molecular Weight (calculated)
81785.5 Da
IEP (calculated)
6.271
GRAVY (calculated)
-0.241
Length
745 amino acids
Sequence
(BLAST)
(BLAST)
001: MNEMKAVPLP YQEFRGNGVL DFASGAAAAV SDSLLLPQQE QFLQRWNPQR ENFCYVGIEP SSGLDRKRKT SSPPTSSSTL SSSRASSGST DSTTGTATAT
101: AAEKENNPPQ AGLEVGQARC GLGMEDWESV LSESPGQDHS ILKLIMGDIE DPSVGLTKLL QGGSGSQDVE FNGVGVGFGL VDQSSVLFPI PSVNFVSSSS
201: SIDPSGTGNC SDFPFNSQTN VSPNVPRVGS GVNPNTTGFP ASASNLSPVS LPQGVFLPQQ QQQHHPPIEP LDEKLQVLNP QFILNQNQSQ FMPNAGLVLP
301: LTYGQLQENH QLLPQPPAKR LNCGPNYQVP KTPFLDSGQE LLLRRQQQQL QLLPHHLLQR PSMVVAPKQK MVNSGGQDLA THQLQQAITE QLFKAAELID
401: AGNLELAHGI LARLNHQLSP IGKPFQRAAF YFKEALQLLL HSNANNSSFT FSPTGLLLKI GAYKSFSEIS PVLQFANFTC NQALLEAVKG FDRIHIIDFD
501: IGLGGQWSSF MQELALRNGG APELKITAFV SPSHHDEIEL SFTQESLKQY AGELRMPFEL EILSLESLNS ASWPQPLRDC KAVVVNMPIG SFSNYPSYLP
601: LVLRFVKQLM PKIVVTLDRS CDRTDAPFPQ HLIFALQSYS GLLESLDAVN VHPDVLQMIE KYYLQPSMEK LVLGRHGLQE RALPWKNLLL SSGFSPLTFS
701: NFTESQAECL VQRTPSKGFH VEKRQSSLVL CWQRKDLISV STWRC
101: AAEKENNPPQ AGLEVGQARC GLGMEDWESV LSESPGQDHS ILKLIMGDIE DPSVGLTKLL QGGSGSQDVE FNGVGVGFGL VDQSSVLFPI PSVNFVSSSS
201: SIDPSGTGNC SDFPFNSQTN VSPNVPRVGS GVNPNTTGFP ASASNLSPVS LPQGVFLPQQ QQQHHPPIEP LDEKLQVLNP QFILNQNQSQ FMPNAGLVLP
301: LTYGQLQENH QLLPQPPAKR LNCGPNYQVP KTPFLDSGQE LLLRRQQQQL QLLPHHLLQR PSMVVAPKQK MVNSGGQDLA THQLQQAITE QLFKAAELID
401: AGNLELAHGI LARLNHQLSP IGKPFQRAAF YFKEALQLLL HSNANNSSFT FSPTGLLLKI GAYKSFSEIS PVLQFANFTC NQALLEAVKG FDRIHIIDFD
501: IGLGGQWSSF MQELALRNGG APELKITAFV SPSHHDEIEL SFTQESLKQY AGELRMPFEL EILSLESLNS ASWPQPLRDC KAVVVNMPIG SFSNYPSYLP
601: LVLRFVKQLM PKIVVTLDRS CDRTDAPFPQ HLIFALQSYS GLLESLDAVN VHPDVLQMIE KYYLQPSMEK LVLGRHGLQE RALPWKNLLL SSGFSPLTFS
701: NFTESQAECL VQRTPSKGFH VEKRQSSLVL CWQRKDLISV STWRC
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [cytosol,plastid]
SUBAcon: [cytosol,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.