CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89416
KRG93305
KRH03466
KRH09716
KRH11729
KRH16959
KRH23588
KRH24006
KRH27971
KRH29310
KRH36722
KRH44476
KRH47432
KRH50476
KRH53667
KRH54542
KRH56614
KRH56919
KRH63357
KRH64261
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66720.1	KRH09716	AT1G80040.1	21798944
AT5G66720.1	KRH23588	AT1G80040.1	21798944
AT5G66720.1	KRH44476	AT1G80040.1	21798944
AT5G66720.1	KRH47432	AT1G80040.1	21798944
AT5G66720.1	KRG93305	AT3G27960.1	21798944
AT5G66720.1	KRH56614	AT3G27960.1	21798944
AT5G66720.1	KRH03466	AT3G47620.1	21798944
AT5G66720.1	KRH54542	AT3G47620.1	21798944
AT5G66720.1	KRH56919	AT3G47620.1	21798944
AT5G66720.1	KRH63357	AT3G47620.1	21798944
AT5G66720.1	KRH24006	AT3G48150.1	21798944
AT5G66720.1	KRH27971	AT3G48150.1	21798944
AT5G66720.1	KRH29310	AT3G48150.1	21798944
AT5G66720.1	KRH77487	AT3G48150.1	21798944
AT5G66720.1	KRH16959	AT3G49580.1	21798944
AT5G66720.1	KRH53667	AT3G49580.1	21798944
AT5G66720.1	KRH64261	AT3G49580.1	21798944
AT5G66720.1	KRG89416	AT4G19700.1	21798944
AT5G66720.1	KRH11729	AT4G19700.1	21798944
AT5G66720.1	KRH36722	AT4G19700.1	21798944
AT5G66720.1	KRH50476	AT4G19700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28642	Soybean	mitochondrion	82.31	85.82
VIT_04s0023g01400.t01	Wine grape	plastid	53.74	62.53
KRH69944	Soybean	cytosol, plastid	51.47	62.36
KRH08301	Soybean	cytosol	51.93	60.58
AT5G66720.1	Thale cress	plastid	47.62	50.72
CDY53852	Canola	plastid	44.9	48.41
Bra012095.1-P	Field mustard	plastid	44.44	47.92
CDY30759	Canola	plastid	43.99	47.32
KRH05793	Soybean	mitochondrion	51.93	45.26
KRH15248	Soybean	mitochondrion	51.7	45.06
EER90674	Sorghum	mitochondrion, plastid	44.67	42.27
Zm00001d013027_P002	Maize	mitochondrion	44.44	41.88
Os03t0809300-01	Rice	plastid	45.12	41.54
Zm00001d034575_P001	Maize	plastid	43.08	40.77
KRH30165	Soybean	cytosol	15.19	30.18
KRG98206	Soybean	cytosol	20.86	28.48
KRH10513	Soybean	mitochondrion, plastid	22.68	12.85

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	Gene3D:3.60.40.10	MapMan:35.1	EMBL:ACUP02000644	EnsemblPlantsGene:GLYMA_01G177100
GO:GO:0003674	GO:GO:0003824	InterPro:IPR001932	InterPro:IPR036457	UniProt:K7K4G3	EnsemblPlants:KRH76843
ProteinID:KRH76843	ProteinID:KRH76843.1	PFAM:PF07228	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746
PANTHER:PTHR12320	PANTHER:PTHR12320:SF16	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI000295E01F	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:51354015..51356575

Molecular Weight (calculated)

47469.1 Da

IEP (calculated)

7.423

GRAVY (calculated)

-0.080

Length

441 amino acids

Sequence
(BLAST)

001: MPGILSWLNA TIYCRIREAI TRQQGAPTSL HRSSALSLGS LYSTSILPGS TYCSSSHTLD TKSMVTASHS NAMLGDVYAY GSISSFGSVL DFTKPAVVYF
101: KDRAHTGCWR DSVNLRRLQP LRIRDSSLLH GLWLKNFSTS SSACYSDGAA HAVSFDGSPP DEQLANSFFS PDPIIVGGKP LKMLSGSCYL PHPDKEDTGG
201: EDAHFICTDE QAIGVADGVG GWADVGVNAG LFAPELISNS VRAIQKEPKG SFNPTRVLEK AHANTKVKGS STACILLLKR LRHYNYYHIE HVFHQAILKS
301: KGLHAINLSD SGFIVVRDGL TIFEFPVQQH DFNFPYQLES GNGADLPSSG EVFTIPVASG DAVIAGTDGL FDNLYNSEIT GVVVHAIRAQ KIAALARQRA
401: LSKSSRTPFS TAAQKAGFCY YGGKLDDITV VVSYISGSVS E

Best Arabidopsis Sequence Match ( AT4G16580.1 )
(BLAST)

001: MLPVRESLQK QVKILIGLGN LGFGGYRGLY TRFTNPNGFL EPASSDLLLI NERRNLSVIG AVSRTFSVPS VSGPAFQVCG YHIDLLLSDP CKSMASLGSK
101: SLFVDRHSAS LVSKRFTGGM VSGDGPNRGR ISMRLRGKDH NEKSTICAYF AYRGAKRWIY LNQQRRGMGF RGLHSSLSNR LSAGNAPDVS LDNSVTDEQV
201: RDSSDSVAAK LCTKPLKLVS GSCYLPHPDK EATGGEDAHF ICAEEQALGV ADGVGGWAEL GIDAGYYSRE LMSNSVNAIQ DEPKGSIDPA RVLEKAHTCT
301: KSQGSSTACI IALTNQGLHA INLGDSGFMV VREGHTVFRS PVQQHDFNFT YQLESGRNGD LPSSGQVFTV AVAPGDVIIA GTDGLFDNLY NNEITAIVVH
401: AVRANIDPQV TAQKIAALAR QRAQDKNRQT PFSTAAQDAG FRYYGGKLDD ITVVVSYVAA SKEEGKH

Arabidopsis Description

Probable protein phosphatase 2C 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUK9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.