Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
- plastid 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH23588 | Soybean | nucleus, plastid | 94.23 | 93.87 |
KRH44476 | Soybean | plastid | 73.08 | 73.08 |
KRH47432 | Soybean | plastid | 67.69 | 67.18 |
PGSC0003DMT400001668 | Potato | plastid | 56.15 | 56.59 |
Solyc03g116780.2.1 | Tomato | plastid | 56.15 | 56.15 |
PGSC0003DMT400073448 | Potato | plastid | 53.46 | 52.85 |
KRH20146 | Soybean | nucleus | 53.08 | 52.67 |
PGSC0003DMT400073696 | Potato | nucleus | 50.38 | 51.57 |
VIT_09s0002g07130.t01 | Wine grape | nucleus, plastid | 47.69 | 48.63 |
Solyc12g042750.1.1 | Tomato | nucleus, plastid | 45.0 | 48.35 |
Os09t0119100-01 | Rice | nucleus, plastid | 46.92 | 45.35 |
CDY70430 | Canola | plastid | 41.54 | 44.08 |
CDY41114 | Canola | nucleus, plastid | 37.31 | 43.89 |
AT1G80040.1 | Thale cress | nucleus, plastid | 41.54 | 43.55 |
CDY37566 | Canola | nucleus, plastid | 40.77 | 43.09 |
Bra008498.1-P | Field mustard | nucleus, plastid | 40.77 | 43.09 |
Bra003546.1-P | Field mustard | plastid | 40.38 | 42.86 |
CDX67941 | Canola | plastid | 39.62 | 42.56 |
Os08t0313600-00 | Rice | nucleus | 43.85 | 41.3 |
TraesCS5B01G159800.1 | Wheat | plastid | 41.92 | 39.49 |
TraesCS5A01G162300.2 | Wheat | nucleus | 40.77 | 38.55 |
HORVU5Hr1G050690.2 | Barley | plastid | 40.0 | 37.82 |
TraesCS5D01G166600.1 | Wheat | nucleus | 40.0 | 37.68 |
Solyc06g068190.1.1 | Tomato | cytosol, nucleus, peroxisome | 19.23 | 34.97 |
Protein Annotations
Gene3D:1.10.8.10 | EntrezGene:100815998 | MapMan:35.2 | EMBL:ACUP02009107 | EMBL:BT096190 | UniProt:C6TF13 |
InterPro:CUE | ncoils:Coil | EnsemblPlantsGene:GLYMA_15G007000 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:IPR003892 | EnsemblPlants:KRH09716 | ProteinID:KRH09716 | ProteinID:KRH09716.1 | PFAM:PF02845 | PFscan:PS51140 |
PANTHER:PTHR31245 | PANTHER:PTHR31245:SF12 | SUPFAM:SSF46934 | InterPro:UBA-like_sf | UniParc:UPI0001B16F00 | SEG:seg |
Description
hypothetical protein
Coordinates
chr15:-:579095..582400
Molecular Weight (calculated)
28880.0 Da
IEP (calculated)
4.905
GRAVY (calculated)
-0.492
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAAVCGSKR SLFEELPPSP PVSKRLRCSS SPIRLSLPSL IDHLRSLFPH MDDQVLERAL QECGNDLDAA IKSLHGLCLG SADDNSQIAP QPDLPNVVHT
101: GTLEENDDAS ASGDQPASGN FPADGAEWID LFVREMTCAT SVDDARSRAA RLLEVLEKSI TAHASSGATT ALQRENLMLK EQIEALTKEK NCFKSAFRIQ
201: LERLSDYENK NQELQQLKQL VSQYQEQIRT LEVNNYALRM HLNQAQQYNP FPGRFPPDAF
101: GTLEENDDAS ASGDQPASGN FPADGAEWID LFVREMTCAT SVDDARSRAA RLLEVLEKSI TAHASSGATT ALQRENLMLK EQIEALTKEK NCFKSAFRIQ
201: LERLSDYENK NQELQQLKQL VSQYQEQIRT LEVNNYALRM HLNQAQQYNP FPGRFPPDAF
001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF
Arabidopsis Description
Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.