CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67941	Canola	plastid	88.16	89.26
AT1G80040.1	Thale cress	nucleus, plastid	73.88	72.98
CDY41114	Canola	nucleus, plastid	65.71	72.85
CDY37566	Canola	nucleus, plastid	71.02	70.73
CDY44312	Canola	nucleus	17.96	46.81
PGSC0003DMT400073448	Potato	plastid	45.31	42.21
VIT_09s0002g07130.t01	Wine grape	nucleus, plastid	43.67	41.96
KRH09716	Soybean	nucleus, plastid	44.08	41.54
PGSC0003DMT400073696	Potato	nucleus	42.86	41.34
CDX99829	Canola	plastid	41.63	40.8
CDY48340	Canola	plastid	40.82	40.65
KRH44476	Soybean	plastid	42.86	40.38
Solyc03g116780.2.1	Tomato	plastid	42.86	40.38
PGSC0003DMT400001668	Potato	plastid	42.45	40.31
KRH23588	Soybean	nucleus, plastid	42.86	40.23
Solyc12g042750.1.1	Tomato	nucleus, plastid	39.18	39.67
CDX94671	Canola	plastid	40.41	39.29
CDY35306	Canola	plastid	40.41	38.08
KRH47432	Soybean	plastid	40.41	37.79
Os09t0119100-01	Rice	nucleus, plastid	41.22	37.55
CDY26987	Canola	cytosol	14.69	37.5
CDX90191	Canola	plastid	40.0	37.4
Os08t0313600-00	Rice	nucleus	40.0	35.51
TraesCS5D01G166600.1	Wheat	nucleus	39.18	34.78
TraesCS5A01G162300.2	Wheat	nucleus	37.96	33.82
TraesCS5B01G159800.1	Wheat	plastid	37.96	33.7
HORVU5Hr1G050690.2	Barley	plastid	36.73	32.73
Solyc06g068190.1.1	Tomato	cytosol, nucleus, peroxisome	18.37	31.47

Protein Annotations

EnsemblPlants:CDY70430	EnsemblPlantsGene:GSBRNA2T00003394001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:CUE
InterPro:IPR003892	ncoils:Coil	PANTHER:PTHR31245	PFAM:PF02845	PFscan:PS51140	ProteinID:CDY70430
ProteinID:CDY70430.1	SEG:seg	UniParc:UPI0004EC3AE5	UniProt:A0A078JVF5	MapMan:35.2	:

Description

BnaC06g42990DBnaC06g42990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JVF5]

Coordinates

chrLK042075:+:946..2756

Molecular Weight (calculated)

27512.2 Da

IEP (calculated)

4.948

GRAVY (calculated)

-0.605

Length

245 amino acids

Sequence
(BLAST)

001: MSAVYCGSKR SYFDDTPSPP PSSKRFRCYS PSNSPSWSSS PPSSLDQLRA AFPHLELTVL VEALEEHGSD LNAAMKSLYA LVSAEEEKRA QELAANKEAD
101: AAGTFTASGD DWVALLVREV TQSAGPDDAK FRAERVLEAL EKTLSARAHE EAGKKFQEES VAVQQQVEAL MKDNTVLKRA VAIQHERQKA LEDANQQLEF
201: FKQLIPQYQE KVRNLEVNNY ALKLQLEQME HGNYMMPQRF NPDVF

Best Arabidopsis Sequence Match ( AT1G80040.1 )
(BLAST)

001: MSAVYCGTKR SYFDDNSSPP SSKRFRCFSP SNSPIWSSPP SSSLDQLHSA FPHIELTVLV KALEDNGSDF NAAMKSLYSF ASSEEKKAEE LAAGGAATQE
101: TDAVCGGNPP TSGDDWVELL VREVLQSSGT DDAKVRAARV LEALEKMLSA RAREEAGNKF QEEKVAVQQQ VETLVKDNTV LKRAVAIQHE RQKALEDANH
201: QLGLLKQLVP QYQEKLRNLE VNNYALRMQL QQVEHGNSMP ARFNPDVF

Arabidopsis Description

F18B13.13 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSD3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.