Factsheet for PGSC0003DMT400001668

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g116780.2.1	Tomato	plastid	95.74	95.0
PGSC0003DMT400073448	Potato	plastid	65.5	64.26
PGSC0003DMT400073696	Potato	nucleus	62.79	63.78
KRH44476	Soybean	plastid	58.91	58.46
KRH09716	Soybean	nucleus, plastid	56.59	56.15
PGSC0003DMT400079410	Potato	plastid	56.59	54.89
KRH23588	Soybean	nucleus, plastid	55.43	54.79
KRH47432	Soybean	plastid	53.49	52.67
PGSC0003DMT400007542	Potato	plastid	56.98	52.31
VIT_09s0002g07130.t01	Wine grape	nucleus, plastid	51.55	52.16
Os09t0119100-01	Rice	nucleus, plastid	50.39	48.33
Os08t0313600-00	Rice	nucleus	47.67	44.57
CDY41114	Canola	nucleus, plastid	37.98	44.34
CDY37566	Canola	nucleus, plastid	42.25	44.31
Bra008498.1-P	Field mustard	nucleus, plastid	41.86	43.9
Bra003546.1-P	Field mustard	plastid	40.7	42.86
TraesCS5B01G159800.1	Wheat	plastid	45.74	42.75
AT1G80040.1	Thale cress	nucleus, plastid	41.09	42.74
CDY70430	Canola	plastid	40.31	42.45
CDX67941	Canola	plastid	39.53	42.15
HORVU5Hr1G050690.2	Barley	plastid	44.57	41.82
TraesCS5A01G162300.2	Wheat	nucleus	44.19	41.45
TraesCS5D01G166600.1	Wheat	nucleus	44.19	41.3

Protein Annotations

EnsemblPlants:PGSC0003DMT400001668	EnsemblPlantsGene:PGSC0003DMG400000623	EntrezGene:102603478	Gene3D:1.10.8.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:CUE	InterPro:IPR003892	InterPro:UBA-like_sf	ncoils:Coil	PANTHER:PTHR31245
PANTHER:PTHR31245:SF12	PFAM:PF02845	PFscan:PS51140	PGSC:PGSC0003DMG400000623	RefSeq:XP_006364225.1	SEG:seg
SUPFAM:SSF46934	UniParc:UPI000294BEE9	UniProt:M0ZIW5	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000623]

Coordinates

chr3:+:56549989..56553346

Molecular Weight (calculated)

29081.4 Da

IEP (calculated)

5.077

GRAVY (calculated)

-0.572

Length

258 amino acids

Sequence
(BLAST)

001: MSAIVCGKRS FFEDLQSPSP TSASPPVSKK IRCSSSTSPV RFPTSLIDQL RTLFPDMDNQ LIEKALEESG NDLDAAIKRL HELQLVYADA KTDGEMENGE
101: KPTNGLDVQS EGPPLQNNLP ADGAEWVELL VREMMSATSV DDARARATRV LESLERSISV HAGVAAAENV HKENVMLKEQ IEVFLREKAI FKRAIAIQHE
201: RQKEYDDRNQ EVQQLKQMIA QYQEQIKNLE VNNYALTMHL HQAQQNNSIP GRFHPDIF

Best Arabidopsis Sequence Match ( AT5G32440.1 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.