Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g042750.1.1 | Tomato | nucleus, plastid | 79.92 | 83.88 |
| PGSC0003DMT400001668 | Potato | plastid | 63.78 | 62.79 |
| PGSC0003DMT400073448 | Potato | plastid | 63.39 | 61.22 |
| KRH44476 | Soybean | plastid | 53.54 | 52.31 |
| KRH09716 | Soybean | nucleus, plastid | 51.57 | 50.38 |
| KRH23588 | Soybean | nucleus, plastid | 51.18 | 49.81 |
| VIT_09s0002g07130.t01 | Wine grape | nucleus, plastid | 50.0 | 49.8 |
| KRH47432 | Soybean | plastid | 49.61 | 48.09 |
| PGSC0003DMT400007542 | Potato | plastid | 52.36 | 47.33 |
| PGSC0003DMT400079410 | Potato | plastid | 49.21 | 46.99 |
| CDY41114 | Canola | nucleus, plastid | 38.98 | 44.8 |
| CDY37566 | Canola | nucleus, plastid | 42.52 | 43.9 |
| Bra008498.1-P | Field mustard | nucleus, plastid | 42.13 | 43.5 |
| CDY70430 | Canola | plastid | 41.34 | 42.86 |
| Bra003546.1-P | Field mustard | plastid | 41.34 | 42.86 |
| CDX67941 | Canola | plastid | 40.16 | 42.15 |
| AT1G80040.1 | Thale cress | nucleus, plastid | 40.94 | 41.94 |
| Os08t0313600-00 | Rice | nucleus | 44.88 | 41.3 |
| Os09t0119100-01 | Rice | nucleus, plastid | 42.52 | 40.15 |
| TraesCS5D01G166600.1 | Wheat | nucleus | 40.94 | 37.68 |
| TraesCS5B01G159800.1 | Wheat | plastid | 40.16 | 36.96 |
| HORVU5Hr1G050690.2 | Barley | plastid | 39.76 | 36.73 |
| TraesCS5A01G162300.2 | Wheat | nucleus | 38.58 | 35.64 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400073696 | EnsemblPlantsGene:PGSC0003DMG400028628 | EntrezGene:102579952 | Gene3D:1.10.8.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:CUE | InterPro:IPR003892 | InterPro:UBA-like_sf | ncoils:Coil | PANTHER:PTHR31245 |
| PANTHER:PTHR31245:SF12 | PFAM:PF02845 | PFscan:PS51140 | PGSC:PGSC0003DMG400028628 | RefSeq:XP_006346597.1 | SUPFAM:SSF46934 |
| UniParc:UPI000295364F | UniProt:M1CSH5 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028628]
Coordinates
chr12:-:49735533..49741534
Molecular Weight (calculated)
28578.8 Da
IEP (calculated)
6.527
GRAVY (calculated)
-0.587
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAIICRKRS FFEDLQSPSP ISASSPVLKK LRSSSYSTSP IHFDQLRALF PDIDSQLLEN ALEESGNDLD AAIRSLHELC LRYSDGKSNT KEIRNGMKPT
101: TGPAAQSEDP SAENNFPANG AEWVDCFVRE MMTATSIDDA RARATRLLES LEKCISSRAG AEAAQNFHKE NIMLKAQIEV LRKDDAILKR AVVIQHERQK
201: EYDERSQEVQ QLKQLIAQGK EQLRTLEMNN YALKTQLRQA QQSNSLLGFK SDVF
101: TGPAAQSEDP SAENNFPANG AEWVDCFVRE MMTATSIDDA RARATRLLES LEKCISSRAG AEAAQNFHKE NIMLKAQIEV LRKDDAILKR AVVIQHERQK
201: EYDERSQEVQ QLKQLIAQGK EQLRTLEMNN YALKTQLRQA QQSNSLLGFK SDVF
001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQKL LYRKTVY
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQKL LYRKTVY
Arabidopsis Description
Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.