Factsheet for AT1G80040.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70430	Canola	plastid	72.98	73.88
CDY41114	Canola	nucleus, plastid	64.92	72.85
Bra003546.1-P	Field mustard	plastid	71.77	72.65
CDX67941	Canola	plastid	69.76	71.49
CDY37566	Canola	nucleus, plastid	70.56	71.14
Bra008498.1-P	Field mustard	nucleus, plastid	69.76	70.33
PGSC0003DMT400073448	Potato	plastid	47.18	44.49
VIT_09s0002g07130.t01	Wine grape	nucleus, plastid	43.55	42.35
KRH09716	Soybean	nucleus, plastid	43.55	41.54
Solyc03g116780.2.1	Tomato	plastid	43.15	41.15
PGSC0003DMT400001668	Potato	plastid	42.74	41.09
PGSC0003DMT400073696	Potato	nucleus	41.94	40.94
KRH44476	Soybean	plastid	42.74	40.77
Solyc12g042750.1.1	Tomato	nucleus, plastid	39.11	40.08
AT5G32440.3	Thale cress	plastid	42.34	39.62
KRH23588	Soybean	nucleus, plastid	41.53	39.46
Os09t0119100-01	Rice	nucleus, plastid	41.13	37.92
KRH47432	Soybean	plastid	39.92	37.79
Os08t0313600-00	Rice	nucleus	40.32	36.23
TraesCS5B01G159800.1	Wheat	plastid	38.31	34.42
TraesCS5D01G166600.1	Wheat	nucleus	38.31	34.42
TraesCS5A01G162300.2	Wheat	nucleus	37.9	34.18
HORVU5Hr1G050690.2	Barley	plastid	37.1	33.45
Solyc06g068190.1.1	Tomato	cytosol, nucleus, peroxisome	18.15	31.47
AT5G02510.2	Thale cress	plastid	26.61	26.09

Protein Annotations

MapMan:35.2	EntrezGene:844344	UniProt:A0A178WCP7	ProteinID:AAD55484.1	ProteinID:AEE36348.1	ArrayExpress:AT1G80040
EnsemblPlantsGene:AT1G80040	RefSeq:AT1G80040	TAIR:AT1G80040	RefSeq:AT1G80040-TAIR-G	EnsemblPlants:AT1G80040.1	TAIR:AT1G80040.1
EMBL:AY072157	EMBL:AY087453	EMBL:AY096413	Unigene:At.43276	InterPro:CUE	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR003892	RefSeq:NP_565228.1	ProteinID:OAP15245.1	PFAM:PF02845
PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016
PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PANTHER:PTHR31245	UniProt:Q9SSD3
SUPFAM:SSF46934	InterPro:UBA-like_sf	UniParc:UPI00000A74E1	SEG:seg	:	:

Description

F18B13.13 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSD3]

Coordinates

chr1:-:30109059..30111284

Molecular Weight (calculated)

27443.1 Da

IEP (calculated)

5.412

GRAVY (calculated)

-0.554

Length

248 amino acids

Sequence
(BLAST)

001: MSAVYCGTKR SYFDDNSSPP SSKRFRCFSP SNSPIWSSPP SSSLDQLHSA FPHIELTVLV KALEDNGSDF NAAMKSLYSF ASSEEKKAEE LAAGGAATQE
101: TDAVCGGNPP TSGDDWVELL VREVLQSSGT DDAKVRAARV LEALEKMLSA RAREEAGNKF QEEKVAVQQQ VETLVKDNTV LKRAVAIQHE RQKALEDANH
201: QLGLLKQLVP QYQEKLRNLE VNNYALRMQL QQVEHGNSMP ARFNPDVF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.