CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003546.1-P	Field mustard	plastid	95.04	93.88
CDY70430	Canola	plastid	89.26	88.16
CDY41114	Canola	nucleus, plastid	65.29	71.49
AT1G80040.1	Thale cress	nucleus, plastid	71.49	69.76
CDY37566	Canola	nucleus, plastid	69.01	67.89
CDY44312	Canola	nucleus	18.18	46.81
VIT_09s0002g07130.t01	Wine grape	nucleus, plastid	43.39	41.18
PGSC0003DMT400073448	Potato	plastid	44.63	41.06
CDX99829	Canola	plastid	42.15	40.8
CDY48340	Canola	plastid	40.91	40.24
PGSC0003DMT400073696	Potato	nucleus	42.15	40.16
KRH09716	Soybean	nucleus, plastid	42.56	39.62
PGSC0003DMT400001668	Potato	plastid	42.15	39.53
CDX90191	Canola	plastid	42.56	39.31
CDX94671	Canola	plastid	40.91	39.29
CDY35306	Canola	plastid	42.15	39.23
Solyc03g116780.2.1	Tomato	plastid	42.15	39.23
KRH44476	Soybean	plastid	41.74	38.85
Solyc12g042750.1.1	Tomato	nucleus, plastid	38.43	38.43
KRH23588	Soybean	nucleus, plastid	41.32	38.31
CDY26987	Canola	cytosol	14.88	37.5
Os08t0313600-00	Rice	nucleus	41.32	36.23
Os09t0119100-01	Rice	nucleus, plastid	40.08	36.06
KRH47432	Soybean	plastid	38.84	35.88
TraesCS5D01G166600.1	Wheat	nucleus	39.67	34.78
TraesCS5B01G159800.1	Wheat	plastid	38.02	33.33
TraesCS5A01G162300.2	Wheat	nucleus	37.6	33.09
HORVU5Hr1G050690.2	Barley	plastid	37.19	32.73
Solyc06g068190.1.1	Tomato	cytosol, nucleus, peroxisome	18.18	30.77

Protein Annotations

EnsemblPlants:CDX67941	EnsemblPlantsGene:GSBRNA2T00099152001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:CUE
InterPro:IPR003892	InterPro:UBA-like_sf	ncoils:Coil	PANTHER:PTHR31245	PFAM:PF02845	PFscan:PS51140
ProteinID:CDX67941	ProteinID:CDX67941.1	SEG:seg	SUPFAM:SSF46934	UniParc:UPI0004EE63CF	MapMan:35.2

Description

BnaA07g19810D

Coordinates

chrLK031787:-:3004817..3006595

Molecular Weight (calculated)

27273.9 Da

IEP (calculated)

5.222

GRAVY (calculated)

-0.640

Length

242 amino acids

Sequence
(BLAST)

001: MSAVYCGSKR SYFDDTPSPP PSSKRFRCYS PSNSPSWSSS SPSSSLDQLR AAFPHLELTV LVEALEEHGS DLNAAMKSLY ALVEEEKRAQ DLAAANKETG
101: TFTASGDDWV ALLVREVTQS SGQDDAKFRA ERVLEALEKT LRARAHEEAG KKFQEESVAV QQQVEALMKD NTVLKRAVAI QHERQKALED ANQQLEFFKQ
201: LIPQYQEKVR NLEVNNYALK LQLEQMEHGS SMMPQRFNPD VF

Best Arabidopsis Sequence Match ( AT1G80040.1 )
(BLAST)

001: MSAVYCGTKR SYFDDNSSPP SSKRFRCFSP SNSPIWSSPP SSSLDQLHSA FPHIELTVLV KALEDNGSDF NAAMKSLYSF ASSEEKKAEE LAAGGAATQE
101: TDAVCGGNPP TSGDDWVELL VREVLQSSGT DDAKVRAARV LEALEKMLSA RAREEAGNKF QEEKVAVQQQ VETLVKDNTV LKRAVAIQHE RQKALEDANH
201: QLGLLKQLVP QYQEKLRNLE VNNYALRMQL QQVEHGNSMP ARFNPDVF

Arabidopsis Description

F18B13.13 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSD3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.