CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44312	Canola	nucleus	36.11	96.81
CDX99829	Canola	plastid	78.57	79.2
CDY48340	Canola	plastid	71.83	73.58
CDY26987	Canola	cytosol	27.78	72.92
CDY35306	Canola	plastid	74.21	71.92
AT5G32440.3	Thale cress	plastid	75.0	71.32
CDX90191	Canola	plastid	72.62	69.85
PGSC0003DMT400079410	Potato	plastid	57.54	54.51
KRH20146	Soybean	nucleus	56.35	54.2
Solyc07g007960.2.1	Tomato	plastid	56.35	53.58
VIT_11s0016g05730.t01	Wine grape	plastid	59.92	53.36
PGSC0003DMT400007542	Potato	plastid	56.75	50.89
Solyc12g009620.1.1	Tomato	plastid	55.95	50.18
Os09t0119100-01	Rice	nucleus, plastid	44.44	41.64
CDY41114	Canola	nucleus, plastid	36.11	41.18
CDX67941	Canola	plastid	39.29	40.91
CDY70430	Canola	plastid	39.29	40.41
Os08t0313600-00	Rice	nucleus	42.46	38.77
TraesCS5A01G162300.2	Wheat	nucleus	41.67	38.18
TraesCS5B01G159800.1	Wheat	plastid	41.27	37.68
HORVU5Hr1G050690.2	Barley	plastid	40.48	37.09
CDY37566	Canola	nucleus, plastid	36.11	36.99
TraesCS5D01G166600.1	Wheat	nucleus	39.29	35.87

Protein Annotations

EnsemblPlants:CDX94671	EnsemblPlantsGene:GSBRNA2T00158007001	Gene3D:1.10.8.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:CUE	InterPro:IPR003892	InterPro:UBA-like_sf	ncoils:Coil	PANTHER:PTHR31245	PANTHER:PTHR31245:SF12
PFscan:PS51140	ProteinID:CDX94671	ProteinID:CDX94671.1	SEG:seg	SUPFAM:SSF46934	UniParc:UPI0004EDFAC5
MapMan:35.2	:	:	:	:	:

Description

BnaC07g09870D

Coordinates

chrLK031883:+:966519..967785

Molecular Weight (calculated)

28148.1 Da

IEP (calculated)

4.935

GRAVY (calculated)

-0.633

Length

252 amino acids

Sequence
(BLAST)

001: MSAVVCGSKR SLFDDLSSAT SSPPLSKKLR SSRFSSSLLL DHLAAIFPDM DNQTLERAIE ECGDDIDSAI RSLNQLRLES ANQNPEPSLV QEQAKVEVGG
101: GGGSEKEQVL NLESTEWVEF FVREMMSASN MNDAKDRASR ALEALEKSIK ARAGADAAMR SSLQQENSML KQQLEAMVQE NSLLKRAVVT QQKRQRETED
201: QSQELQGLRQ MVSQYQEQLR TLEVNNYALT LHLKQAQQNN SSIPGRFHPD VF

Best Arabidopsis Sequence Match ( AT5G32440.3 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.