Factsheet for VIT_11s0016g05730.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20146	Soybean	nucleus	62.9	67.94
CDY44312	Canola	nucleus	21.91	65.96
Bra030141.1-P	Field mustard	nucleus	42.76	63.02
AT5G32440.3	Thale cress	plastid	58.66	62.64
PGSC0003DMT400079410	Potato	plastid	58.66	62.41
Bra010829.1-P	Field mustard	plastid	56.89	61.22
CDX99829	Canola	plastid	53.71	60.8
CDY48340	Canola	plastid	52.65	60.57
Bra032320.1-P	Field mustard	plastid	52.65	60.57
Solyc07g007960.2.1	Tomato	plastid	56.54	60.38
CDX90191	Canola	plastid	55.48	59.92
CDX94671	Canola	plastid	53.36	59.92
CDY35306	Canola	plastid	54.42	59.23
PGSC0003DMT400007542	Potato	plastid	58.3	58.72
VIT_09s0002g07130.t01	Wine grape	nucleus, plastid	52.3	58.04
Solyc12g009620.1.1	Tomato	plastid	57.24	57.65
CDY26987	Canola	cytosol	18.37	54.17
Os09t0119100-01	Rice	nucleus, plastid	49.47	52.04
TraesCS5B01G159800.1	Wheat	plastid	45.94	47.1
HORVU5Hr1G050690.2	Barley	plastid	45.58	46.91
TraesCS5A01G162300.2	Wheat	nucleus	45.23	46.55
Os08t0313600-00	Rice	nucleus	44.88	46.01
TraesCS5D01G166600.1	Wheat	nucleus	44.52	45.65
VIT_08s0007g00080.t01	Wine grape	nucleus, plastid	36.04	37.23

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100250952	wikigene:100250952	MapMan:35.2	ProteinID:CBI28239	ProteinID:CBI28239.3
InterPro:CUE	ncoils:Coil	UniProt:D7TC54	EMBL:FN595756	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR003892	EntrezGene:LOC100250952	wikigene:LOC100250952	PFAM:PF02845	PFscan:PS51140
PANTHER:PTHR31245	PANTHER:PTHR31245:SF12	SUPFAM:SSF46934	InterPro:UBA-like_sf	UniParc:UPI00015C8F44	ArrayExpress:VIT_11s0016g05730
EnsemblPlantsGene:VIT_11s0016g05730	EnsemblPlants:VIT_11s0016g05730.t01	unigene:Vvi.626	RefSeq:XP_002285400	RefSeq:XP_002285400.1	RefSeq:XP_003633082
RefSeq:XP_003633082.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:5221791..5230986

Molecular Weight (calculated)

31288.8 Da

IEP (calculated)

5.413

GRAVY (calculated)

-0.488

Length

283 amino acids

Sequence
(BLAST)

001: MSAIVCGKRS FFEDLPTTPP VSKRIRCSSS SPVRFSPPRS ISASPSQSQS TASQASVLDH LRALFPDMDK QFLEKALEEC GNDLDSTIKS LNELRLGSAQ
101: NNLGFGAGTS DVGLETKVQL QSQGVAATNG EVVSSEDPSA PKNLSMDGAE WVELFVREMM SASNMDDARA RASRALEVLE KSICARASAE AAQSFHQENL
201: MLKEQVEALL QENIILKRAV SIQHERQKES EERNQELQHL KQVVTQYQEQ LRTLEVNNYA LSMHLRQAQQ SSSIPGHFHP DVF

Best Arabidopsis Sequence Match ( AT5G32440.3 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.