Factsheet for Bra032320.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48340	Canola	plastid	100.0	100.0
Bra030141.1-P	Field mustard	nucleus	59.35	76.04
Bra010829.1-P	Field mustard	plastid	78.05	73.0
AT5G32440.3	Thale cress	plastid	74.39	69.06
KRH20146	Soybean	nucleus	57.72	54.2
VIT_11s0016g05730.t01	Wine grape	plastid	60.57	52.65
PGSC0003DMT400079410	Potato	plastid	54.88	50.75
Solyc07g007960.2.1	Tomato	plastid	54.06	50.19
PGSC0003DMT400007542	Potato	plastid	56.5	49.47
Solyc12g009620.1.1	Tomato	plastid	55.28	48.4
Bra003546.1-P	Field mustard	plastid	41.46	41.63
Os09t0119100-01	Rice	nucleus, plastid	43.5	39.78
Bra008498.1-P	Field mustard	nucleus, plastid	39.02	39.02
Os08t0313600-00	Rice	nucleus	41.46	36.96
TraesCS5A01G162300.2	Wheat	nucleus	40.65	36.36
TraesCS5B01G159800.1	Wheat	plastid	40.65	36.23
HORVU5Hr1G050690.2	Barley	plastid	39.43	35.27
TraesCS5D01G166600.1	Wheat	nucleus	39.43	35.14

Protein Annotations

EnsemblPlants:Bra032320.1	EnsemblPlants:Bra032320.1-P	EnsemblPlantsGene:Bra032320	Gene3D:1.10.8.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:CUE	InterPro:IPR003892	InterPro:UBA-like_sf	ncoils:Coil	PANTHER:PTHR31245
PANTHER:PTHR31245:SF12	PFscan:PS51140	SEG:seg	SUPFAM:SSF46934	UniParc:UPI0002542649	UniProt:M4EU38
MapMan:35.2	:	:	:	:	:

Description

AT5G32440 (E=8e-062) | LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80040.1); Has 303 Blast hits to 289 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 74; Fungi - 21; Plants - 93; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).

Coordinates

chrA09:-:22568507..22569314

Molecular Weight (calculated)

27715.8 Da

IEP (calculated)

5.061

GRAVY (calculated)

-0.598

Length

246 amino acids

Sequence
(BLAST)

001: MSAIVCGSKR SVFEDLSSSP PLSKKLRRFS SSSSSLLLLP HLAALFPDMD THILERAIEE CGDDIDSAIR SLNQLRLDKS SESSLIQEEA KVEGGGSSGK
101: EEVLNMDGNE WVELFVREMM NASDMKDAKD RASRALQALE KSINTRAGSD AAMQISLQQE NLMLRQQLEA IVQENSLLKR AVVTQQKRQK ETEDQSQELQ
201: RLRQMVTQYQ EQLRTLEVNN YALTLHLKQA QQNNSSIPGR YNPDVF

Best Arabidopsis Sequence Match ( AT5G32440.3 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.