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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 4
  • plastid 4
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX90191 Canola plastid 90.11 90.46
CDY35306 Canola plastid 84.79 85.77
Bra032320.1-P Field mustard plastid 73.0 78.05
Bra030141.1-P Field mustard nucleus 56.65 77.6
AT5G32440.3 Thale cress plastid 76.81 76.23
VIT_11s0016g05730.t01 Wine grape plastid 61.22 56.89
KRH20146 Soybean nucleus 56.65 56.87
PGSC0003DMT400079410 Potato plastid 54.37 53.76
Solyc07g007960.2.1 Tomato plastid 52.85 52.45
PGSC0003DMT400007542 Potato plastid 55.89 52.31
Solyc12g009620.1.1 Tomato plastid 55.51 51.96
Os09t0119100-01 Rice nucleus, plastid 44.11 43.12
Bra003546.1-P Field mustard plastid 39.16 42.04
Bra008498.1-P Field mustard nucleus, plastid 36.5 39.02
Os08t0313600-00 Rice nucleus 40.3 38.41
TraesCS5B01G159800.1 Wheat plastid 39.92 38.04
HORVU5Hr1G050690.2 Barley plastid 39.54 37.82
TraesCS5A01G162300.2 Wheat nucleus 39.54 37.82
TraesCS5D01G166600.1 Wheat nucleus 37.64 35.87
Protein Annotations
EnsemblPlants:Bra010829.1EnsemblPlants:Bra010829.1-PEnsemblPlantsGene:Bra010829Gene3D:1.10.8.10GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:UBA-like_sfncoils:CoilPANTHER:PTHR31245SEG:segSUPFAM:SSF46934
UniParc:UPI00025470EAUniProt:M4D2X6MapMan:35.2:::
Description
AT5G32440 (E=5e-100) | LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80040.1); Has 303 Blast hits to 289 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 74; Fungi - 21; Plants - 93; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).
Coordinates
chrA08:-:16671741..16672642
Molecular Weight (calculated)
29452.7 Da
IEP (calculated)
4.843
GRAVY (calculated)
-0.621
Length
263 amino acids
Sequence
(BLAST)
001: MSAIVCGSKR SLFEDLSAAS SPPVSKKLRY FSSSSPPRFP PPPPASSSLL LDHLAAIFPD MDHQILERAI EECGDDIDSA IRCLNQLRLE STTNKNSESS
101: LIQEEAKVEA PQQQGKEEEV LNLDGTEWVN LFVSEMMNAS DMKDAKDRAG RALEALEKSI NARAGADAAM QSSLQQENSM LRQQLEAIVQ ENGLLKRAVV
201: MQQKRQKESD DQSQELQHLR QMVTQYQEQL RTLEVNNYAL TLHLKQAQQN NSSIPGRFHP DVF
Best Arabidopsis Sequence Match ( AT5G32440.3 )
(BLAST)
001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF
Arabidopsis Description
Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.