Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44312 | Canola | nucleus | 30.57 | 86.17 |
| CDX99829 | Canola | plastid | 75.09 | 79.6 |
| Bra030141.1-P | Field mustard | nucleus | 56.23 | 77.6 |
| Bra010829.1-P | Field mustard | plastid | 76.23 | 76.81 |
| CDY35306 | Canola | plastid | 73.96 | 75.38 |
| CDX94671 | Canola | plastid | 71.32 | 75.0 |
| CDX90191 | Canola | plastid | 73.58 | 74.43 |
| CDY48340 | Canola | plastid | 69.06 | 74.39 |
| Bra032320.1-P | Field mustard | plastid | 69.06 | 74.39 |
| CDY26987 | Canola | cytosol | 26.04 | 71.88 |
| VIT_11s0016g05730.t01 | Wine grape | plastid | 62.64 | 58.66 |
| KRH20146 | Soybean | nucleus | 57.74 | 58.4 |
| PGSC0003DMT400079410 | Potato | plastid | 54.34 | 54.14 |
| Solyc07g007960.2.1 | Tomato | plastid | 53.58 | 53.58 |
| Solyc12g009620.1.1 | Tomato | plastid | 56.6 | 53.38 |
| PGSC0003DMT400007542 | Potato | plastid | 56.23 | 53.02 |
| Os09t0119100-01 | Rice | nucleus, plastid | 43.02 | 42.38 |
| AT1G80040.1 | Thale cress | nucleus, plastid | 39.62 | 42.34 |
| TraesCS5B01G159800.1 | Wheat | plastid | 40.75 | 39.13 |
| Os08t0313600-00 | Rice | nucleus | 40.38 | 38.77 |
| HORVU5Hr1G050690.2 | Barley | plastid | 40.0 | 38.55 |
| TraesCS5A01G162300.2 | Wheat | nucleus | 40.0 | 38.55 |
| TraesCS5D01G166600.1 | Wheat | nucleus | 40.0 | 38.41 |
| AT5G02510.2 | Thale cress | plastid | 25.66 | 26.88 |
Protein Annotations
| Gene3D:1.10.8.10 | MapMan:35.2 | EntrezGene:833203 | ProteinID:AED93881.1 | ArrayExpress:AT5G32440 | EnsemblPlantsGene:AT5G32440 |
| RefSeq:AT5G32440 | TAIR:AT5G32440 | RefSeq:AT5G32440-TAIR-G | EnsemblPlants:AT5G32440.3 | TAIR:AT5G32440.3 | Unigene:At.19058 |
| InterPro:CUE | ncoils:Coil | UniProt:F4KED5 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR003892 | RefSeq:NP_001190418.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS51140 | PANTHER:PTHR31245 | PANTHER:PTHR31245:SF12 | SUPFAM:SSF46934 | InterPro:UBA-like_sf | UniParc:UPI0001E93183 |
| SEG:seg | : | : | : | : | : |
Description
Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
Coordinates
chr5:+:12076893..12078603
Molecular Weight (calculated)
29790.3 Da
IEP (calculated)
5.222
GRAVY (calculated)
-0.610
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.