Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44312 | Canola | nucleus | 73.96 | 75.53 |
| CDY48340 | Canola | plastid | 75.0 | 29.27 |
| CDX99829 | Canola | plastid | 76.04 | 29.2 |
| CDX94671 | Canola | plastid | 72.92 | 27.78 |
| AT5G32440.3 | Thale cress | plastid | 71.88 | 26.04 |
| CDX90191 | Canola | plastid | 70.83 | 25.95 |
| CDY35306 | Canola | plastid | 69.79 | 25.77 |
| KRH20146 | Soybean | nucleus | 53.12 | 19.47 |
| VIT_11s0016g05730.t01 | Wine grape | plastid | 54.17 | 18.37 |
| Solyc12g009620.1.1 | Tomato | plastid | 52.08 | 17.79 |
| PGSC0003DMT400007542 | Potato | plastid | 52.08 | 17.79 |
| Solyc07g007960.2.1 | Tomato | plastid | 48.96 | 17.74 |
| PGSC0003DMT400079410 | Potato | plastid | 48.96 | 17.67 |
| Os09t0119100-01 | Rice | nucleus, plastid | 44.79 | 15.99 |
| CDY41114 | Canola | nucleus, plastid | 35.42 | 15.38 |
| CDX67941 | Canola | plastid | 37.5 | 14.88 |
| CDY70430 | Canola | plastid | 37.5 | 14.69 |
| TraesCS5A01G162300.2 | Wheat | nucleus | 41.67 | 14.55 |
| TraesCS5B01G159800.1 | Wheat | plastid | 41.67 | 14.49 |
| TraesCS5D01G166600.1 | Wheat | nucleus | 41.67 | 14.49 |
| CDY37566 | Canola | nucleus, plastid | 35.42 | 13.82 |
| HORVU5Hr1G050690.2 | Barley | plastid | 39.58 | 13.82 |
| Os08t0313600-00 | Rice | nucleus | 36.46 | 12.68 |
Protein Annotations
| EnsemblPlants:CDY26987 | EnsemblPlantsGene:GSBRNA2T00036762001 | ncoils:Coil | PANTHER:PTHR31245 | ProteinID:CDY26987 | ProteinID:CDY26987.1 |
| UniParc:UPI0004EF1B51 | UniProt:A0A078GP81 | MapMan:35.2 | : | : | : |
Description
BnaC06g12030DBnaC06g12030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GP81]
Coordinates
chrLK032198:+:1937..2227
Molecular Weight (calculated)
11334.6 Da
IEP (calculated)
8.987
GRAVY (calculated)
-0.775
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MQSSVQQENM MLRLHFEAIV QDNSLLKRAV VTQQKRHRET EDQNQELQGL RQMVTQYHEQ LKTLEVNKYA LTLHLKQALQ DNSSIPSQYH LFLGKT
001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF
Arabidopsis Description
Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.