CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008498.1-P	Field mustard	nucleus, plastid	99.19	99.19
CDY41114	Canola	nucleus, plastid	80.89	90.05
CDY70430	Canola	plastid	70.73	71.02
AT1G80040.1	Thale cress	nucleus, plastid	71.14	70.56
CDX67941	Canola	plastid	67.89	69.01
CDY44312	Canola	nucleus	17.07	44.68
PGSC0003DMT400073696	Potato	nucleus	43.9	42.52
Solyc03g116780.2.1	Tomato	plastid	44.72	42.31
PGSC0003DMT400001668	Potato	plastid	44.31	42.25
Solyc12g042750.1.1	Tomato	nucleus, plastid	41.06	41.74
VIT_09s0002g07130.t01	Wine grape	nucleus, plastid	43.09	41.57
PGSC0003DMT400073448	Potato	plastid	44.31	41.44
KRH09716	Soybean	nucleus, plastid	43.09	40.77
KRH44476	Soybean	plastid	42.68	40.38
CDX99829	Canola	plastid	40.24	39.6
CDY48340	Canola	plastid	39.43	39.43
KRH23588	Soybean	nucleus, plastid	41.06	38.7
KRH47432	Soybean	plastid	39.43	37.02
CDX94671	Canola	plastid	36.99	36.11
CDX90191	Canola	plastid	38.21	35.88
CDY35306	Canola	plastid	37.8	35.77
CDY26987	Canola	cytosol	13.82	35.42
Os09t0119100-01	Rice	nucleus, plastid	38.62	35.32
Os08t0313600-00	Rice	nucleus	39.02	34.78
TraesCS5D01G166600.1	Wheat	nucleus	37.8	33.7
TraesCS5B01G159800.1	Wheat	plastid	36.99	32.97
TraesCS5A01G162300.2	Wheat	nucleus	36.59	32.73
HORVU5Hr1G050690.2	Barley	plastid	36.18	32.36
Solyc06g068190.1.1	Tomato	cytosol, nucleus, peroxisome	18.29	31.47

Protein Annotations

EnsemblPlants:CDY37566	EnsemblPlantsGene:GSBRNA2T00064191001	ncoils:Coil	PANTHER:PTHR31245	PANTHER:PTHR31245:SF12	ProteinID:CDY37566
ProteinID:CDY37566.1	SEG:seg	UniParc:UPI0004EF2EF7	UniProt:A0A078HIS0	MapMan:35.2	:

Description

BnaA02g20040DBnaA02g20040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIS0]

Coordinates

chrLK032403:-:76828..78406

Molecular Weight (calculated)

27637.4 Da

IEP (calculated)

5.060

GRAVY (calculated)

-0.634

Length

246 amino acids

Sequence
(BLAST)

001: MSAVYCGSKR SYFEDIPSPP SSKRFRCYSP SDSPIWSSPP SSSLDQLRTA FPHLELTVLV KALEEHGNDL CAATRSLHSE EKKAEELANM ESHAVAGGTF
101: TADSDNHPAS GDDWVGLLIR EVTQSTGIDD AKVRAAKVLQ SLEQTLSSRA REEAGKIFQE EKVAVQQQVE DLMKDNTVLK RAVAIQHERQ KAFEDANQQL
201: ELLKQVIPQY QEKIRNLEMN NYALNLRLQQ AEQGNSMLER FNPDVY

Best Arabidopsis Sequence Match ( AT1G80040.1 )
(BLAST)

001: MSAVYCGTKR SYFDDNSSPP SSKRFRCFSP SNSPIWSSPP SSSLDQLHSA FPHIELTVLV KALEDNGSDF NAAMKSLYSF ASSEEKKAEE LAAGGAATQE
101: TDAVCGGNPP TSGDDWVELL VREVLQSSGT DDAKVRAARV LEALEKMLSA RAREEAGNKF QEEKVAVQQQ VETLVKDNTV LKRAVAIQHE RQKALEDANH
201: QLGLLKQLVP QYQEKLRNLE VNNYALRMQL QQVEHGNSMP ARFNPDVF

Arabidopsis Description

F18B13.13 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSD3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.