Factsheet for PGSC0003DMT400073448

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001668	Potato	plastid	64.26	65.5
PGSC0003DMT400073696	Potato	nucleus	61.22	63.39
Solyc06g068190.1.1	Tomato	cytosol, nucleus, peroxisome	33.84	62.24
VIT_09s0002g07130.t01	Wine grape	nucleus, plastid	54.75	56.47
PGSC0003DMT400079410	Potato	plastid	56.65	56.02
KRH44476	Soybean	plastid	53.61	54.23
KRH09716	Soybean	nucleus, plastid	52.85	53.46
KRH23588	Soybean	nucleus, plastid	51.71	52.11
PGSC0003DMT400007542	Potato	plastid	53.23	49.82
KRH47432	Soybean	plastid	49.05	49.24
Os09t0119100-01	Rice	nucleus, plastid	49.43	48.33
AT1G80040.1	Thale cress	nucleus, plastid	44.49	47.18
CDY41114	Canola	nucleus, plastid	38.78	46.15
CDY70430	Canola	plastid	42.21	45.31
Bra003546.1-P	Field mustard	plastid	42.21	45.31
CDX67941	Canola	plastid	41.06	44.63
CDY37566	Canola	nucleus, plastid	41.44	44.31
Bra008498.1-P	Field mustard	nucleus, plastid	41.06	43.9
Os08t0313600-00	Rice	nucleus	46.01	43.84
HORVU5Hr1G050690.2	Barley	plastid	45.25	43.27
TraesCS5B01G159800.1	Wheat	plastid	44.49	42.39
TraesCS5D01G166600.1	Wheat	nucleus	44.49	42.39
TraesCS5A01G162300.2	Wheat	nucleus	42.97	41.09

Protein Annotations

EnsemblPlants:PGSC0003DMT400073448	EnsemblPlantsGene:PGSC0003DMG402028532	EntrezGene:102598976	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:CUE	InterPro:IPR003892	InterPro:UBA-like_sf	ncoils:Coil	PANTHER:PTHR31245	PANTHER:PTHR31245:SF12
PFAM:PF02845	PFscan:PS51140	PGSC:PGSC0003DMG402028532	RefSeq:XP_006356221.1	SEG:seg	SUPFAM:SSF46934
UniParc:UPI0002950061	UniProt:M1CS12	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402028532]

Coordinates

chr6:+:49815881..49820531

Molecular Weight (calculated)

29498.9 Da

IEP (calculated)

5.565

GRAVY (calculated)

-0.465

Length

263 amino acids

Sequence
(BLAST)

001: MSAMVYGKRS FFDDLQSPSP TSPSTPVSKK LRCSSTSPRR FSPPPPAAVS IDHLRALFPD VDCQFLEKAL EECGNDLDVA IKRLHELHLS HAHGKSVSAS
101: EADGEMDGEF AGIVNTAFVI NNPPADGTEW VELFVREMMS ATSTDDARAR ATIVLESLEK SISASASAEA AQNFQKENMM LKEQIELILR DNIILKRLVA
201: IQHERQKEHN DDRTQEVQQL KQLIAQYQEQ LRTLEVNNYS LKMHLQQAQQ CNSIPGHFHP DVF

Best Arabidopsis Sequence Match ( AT5G32440.3 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.