Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400073448 | Potato | plastid | 62.24 | 33.84 |
| Solyc03g116780.2.1 | Tomato | plastid | 46.85 | 25.77 |
| VIT_09s0002g07130.t01 | Wine grape | nucleus, plastid | 42.66 | 23.92 |
| Solyc12g042750.1.1 | Tomato | nucleus, plastid | 39.86 | 23.55 |
| Os09t0119100-01 | Rice | nucleus, plastid | 39.86 | 21.19 |
| KRH44476 | Soybean | plastid | 38.46 | 21.15 |
| Solyc07g007960.2.1 | Tomato | plastid | 39.16 | 21.13 |
| Solyc12g009620.1.1 | Tomato | plastid | 39.16 | 19.93 |
| CDY41114 | Canola | nucleus, plastid | 30.77 | 19.91 |
| KRH47432 | Soybean | plastid | 36.36 | 19.85 |
| HORVU5Hr1G050690.2 | Barley | plastid | 37.06 | 19.27 |
| KRH09716 | Soybean | nucleus, plastid | 34.97 | 19.23 |
| TraesCS5B01G159800.1 | Wheat | plastid | 36.36 | 18.84 |
| KRH23588 | Soybean | nucleus, plastid | 34.27 | 18.77 |
| TraesCS5D01G166600.1 | Wheat | nucleus | 35.66 | 18.48 |
| CDY70430 | Canola | plastid | 31.47 | 18.37 |
| Bra003546.1-P | Field mustard | plastid | 31.47 | 18.37 |
| CDY37566 | Canola | nucleus, plastid | 31.47 | 18.29 |
| CDX67941 | Canola | plastid | 30.77 | 18.18 |
| AT1G80040.1 | Thale cress | nucleus, plastid | 31.47 | 18.15 |
| Bra008498.1-P | Field mustard | nucleus, plastid | 30.77 | 17.89 |
| TraesCS5A01G162300.2 | Wheat | nucleus | 34.27 | 17.82 |
| Os08t0313600-00 | Rice | nucleus | 32.17 | 16.67 |
Protein Annotations
| EnsemblPlants:Solyc06g068190.1.1 | EnsemblPlantsGene:Solyc06g068190.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR31245 |
| PANTHER:PTHR31245:SF12 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002766180 | UniProt:K4C7Z4 | MapMan:35.2 |
Description
No Description!
Coordinates
chr6:+:42249220..42249971
Molecular Weight (calculated)
16765.7 Da
IEP (calculated)
8.711
GRAVY (calculated)
-0.052
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MNATSTDDAR ARAAIMLESL EKSISASASA EATQNFQKEN MMLKEQIELI LRDNIIMKRL VAIQHERQKE HNDDRIQKVQ QLKHLIAQYL SRYKLQLHIL
101: FLLYQCTING DVFLITTITR DQNYFCLLIV VPLMQVLFRS LWI
101: FLLYQCTING DVFLITTITR DQNYFCLLIV VPLMQVLFRS LWI
001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF
Arabidopsis Description
Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.