CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47432	Soybean	plastid	84.23	83.59
KRH09716	Soybean	nucleus, plastid	73.08	73.08
KRH23588	Soybean	nucleus, plastid	71.92	71.65
Solyc03g116780.2.1	Tomato	plastid	59.23	59.23
PGSC0003DMT400001668	Potato	plastid	58.46	58.91
PGSC0003DMT400073448	Potato	plastid	54.23	53.61
PGSC0003DMT400073696	Potato	nucleus	52.31	53.54
KRH20146	Soybean	nucleus	53.08	52.67
VIT_09s0002g07130.t01	Wine grape	nucleus, plastid	49.62	50.59
Solyc12g042750.1.1	Tomato	nucleus, plastid	45.77	49.17
Os09t0119100-01	Rice	nucleus, plastid	46.54	44.98
CDY41114	Canola	nucleus, plastid	38.08	44.8
Bra003546.1-P	Field mustard	plastid	40.38	42.86
CDY70430	Canola	plastid	40.38	42.86
AT1G80040.1	Thale cress	nucleus, plastid	40.77	42.74
CDY37566	Canola	nucleus, plastid	40.38	42.68
Bra008498.1-P	Field mustard	nucleus, plastid	40.38	42.68
CDX67941	Canola	plastid	38.85	41.74
TraesCS5B01G159800.1	Wheat	plastid	42.69	40.22
Os08t0313600-00	Rice	nucleus	41.92	39.49
TraesCS5A01G162300.2	Wheat	nucleus	41.54	39.27
TraesCS5D01G166600.1	Wheat	nucleus	41.15	38.77
Solyc06g068190.1.1	Tomato	cytosol, nucleus, peroxisome	21.15	38.46
HORVU5Hr1G050690.2	Barley	plastid	40.38	38.18

Protein Annotations

EMBL:ACUP02004928	EnsemblPlants:KRH44476	EnsemblPlantsGene:GLYMA_08G213300	EntrezGene:100791728	Gene3D:1.10.8.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:CUE	InterPro:IPR003892	InterPro:UBA-like_sf	ncoils:Coil
PANTHER:PTHR31245	PANTHER:PTHR31245:SF12	PFAM:PF02845	PFscan:PS51140	ProteinID:KRH44476	ProteinID:KRH44476.1
SEG:seg	SUPFAM:SSF46934	UniParc:UPI0002338F82	UniProt:I1KVF9	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr8:+:17218003..17221349

Molecular Weight (calculated)

29239.8 Da

IEP (calculated)

4.801

GRAVY (calculated)

-0.477

Length

260 amino acids

Sequence
(BLAST)

001: MSAAVCGSKR SFFEELPPSP PLSKRLRCSS SPIRFPPPSP VDQLRPLFPH MDDLVLERAL QECGNDIDAA IKRLNELCLG TADRNGIAEE LEVVINLDAG
101: NLEGDGNASV SEEQPALNNH LPADGAEWID FFVREMMVAT SVEDARARAA RMLEVLEKSI SERAKAEATD VLQKENLMLK EQIEALIKEK NSFKNAFRIQ
201: HERSADYEVK NQELQHLKQL VSQYQEQIKT LEVNNYALAM HLKQAQQSNP FPGRFPPDVF

Best Arabidopsis Sequence Match ( AT5G32440.1 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.