CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44312	Canola	nucleus	24.05	67.02
VIT_11s0016g05730.t01	Wine grape	plastid	67.94	62.9
Bra030141.1-P	Field mustard	nucleus	43.89	59.9
AT5G32440.3	Thale cress	plastid	58.4	57.74
Bra032320.1-P	Field mustard	plastid	54.2	57.72
CDY48340	Canola	plastid	54.2	57.72
CDX99829	Canola	plastid	54.58	57.2
Bra010829.1-P	Field mustard	plastid	56.87	56.65
CDX94671	Canola	plastid	54.2	56.35
CDX90191	Canola	plastid	56.11	56.11
CDY35306	Canola	plastid	55.34	55.77
PGSC0003DMT400079410	Potato	plastid	56.49	55.64
Solyc07g007960.2.1	Tomato	plastid	54.58	53.96
CDY26987	Canola	cytosol	19.47	53.12
KRH44476	Soybean	plastid	52.67	53.08
KRH09716	Soybean	nucleus, plastid	52.67	53.08
KRH23588	Soybean	nucleus, plastid	52.67	52.87
PGSC0003DMT400007542	Potato	plastid	56.49	52.67
Solyc12g009620.1.1	Tomato	plastid	54.2	50.53
KRH47432	Soybean	plastid	48.09	48.09
Os09t0119100-01	Rice	nucleus, plastid	45.42	44.24
Os08t0313600-00	Rice	nucleus	45.42	43.12
TraesCS5D01G166600.1	Wheat	nucleus	42.75	40.58
TraesCS5B01G159800.1	Wheat	plastid	41.6	39.49
TraesCS5A01G162300.2	Wheat	nucleus	41.22	39.27
HORVU5Hr1G050690.2	Barley	plastid	40.84	38.91

Protein Annotations

EMBL:ACUP02008242	EnsemblPlants:KRH20146	EnsemblPlantsGene:GLYMA_13G159500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:CUE	InterPro:IPR003892	InterPro:UBA-like_sf	ncoils:Coil	PANTHER:PTHR31245	PFAM:PF02845
PFscan:PS51140	ProteinID:KRH20146	ProteinID:KRH20146.1	SEG:seg	SUPFAM:SSF46934	UniParc:UPI000233B38C
UniProt:I1LZQ5	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:27476780..27479031

Molecular Weight (calculated)

29039.6 Da

IEP (calculated)

5.990

GRAVY (calculated)

-0.432

Length

262 amino acids

Sequence
(BLAST)

001: MSAIIVCGKR SALFQDLPPK RIRCSSSSSP VHLSPPPSSL LHHLAALFPD MDHHLLEKAL QDCGNDIDSA IRSLNQLRLG APPPPSLDST PIASDTAPPQ
101: LQGGAKCDAE VSGSDDPAAG LKYLTSGAEW VELFVIEMMN ASNMDDAKSR ASRMLEALEK SICARASVET ERNIHQENMM LKEQVEALIQ ENVILKRAVG
201: IQHERQKEYE DRNQELKHLK QLVSQYQEQV RALEVNNYAL TMHLKQAEQS SSIPGRFHPD VF

Best Arabidopsis Sequence Match ( AT5G32440.1 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.