Factsheet for PGSC0003DMT400007542

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009620.1.1	Tomato	plastid	92.17	92.17
CDY44312	Canola	nucleus	22.42	67.02
PGSC0003DMT400079410	Potato	plastid	61.57	65.04
Bra030141.1-P	Field mustard	nucleus	40.57	59.38
CDX99829	Canola	plastid	51.96	58.4
VIT_11s0016g05730.t01	Wine grape	plastid	58.72	58.3
PGSC0003DMT400001668	Potato	plastid	52.31	56.98
CDX94671	Canola	plastid	50.89	56.75
Bra032320.1-P	Field mustard	plastid	49.47	56.5
CDY48340	Canola	plastid	49.47	56.5
KRH20146	Soybean	nucleus	52.67	56.49
AT5G32440.3	Thale cress	plastid	53.02	56.23
CDY35306	Canola	plastid	51.96	56.15
Bra010829.1-P	Field mustard	plastid	52.31	55.89
CDX90191	Canola	plastid	51.6	55.34
PGSC0003DMT400073448	Potato	plastid	49.82	53.23
PGSC0003DMT400073696	Potato	nucleus	47.33	52.36
CDY26987	Canola	cytosol	17.79	52.08
Os09t0119100-01	Rice	nucleus, plastid	41.28	43.12
TraesCS5D01G166600.1	Wheat	nucleus	41.64	42.39
Os08t0313600-00	Rice	nucleus	40.93	41.67
TraesCS5B01G159800.1	Wheat	plastid	40.21	40.94
HORVU5Hr1G050690.2	Barley	plastid	39.86	40.73
TraesCS5A01G162300.2	Wheat	nucleus	39.5	40.36

Protein Annotations

EnsemblPlants:PGSC0003DMT400007542	EnsemblPlantsGene:PGSC0003DMG400002912	EntrezGene:102595974	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:CUE	InterPro:IPR003892	InterPro:UBA-like_sf	ncoils:Coil	PANTHER:PTHR31245	PANTHER:PTHR31245:SF1
PFscan:PS51140	PGSC:PGSC0003DMG400002912	RefSeq:XP_006345221.1	SUPFAM:SSF46934	UniParc:UPI000296D602	UniProt:M0ZT61
MapMan:35.2	:	:	:	:	:

Description

CUE domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002912]

Coordinates

chr12:-:2753728..2762101

Molecular Weight (calculated)

31047.3 Da

IEP (calculated)

5.239

GRAVY (calculated)

-0.525

Length

281 amino acids

Sequence
(BLAST)

001: MSAIVCGKRS NLFEDFQSSS SAPTPVSKRI RRTFSPARSN SDSDRVFSGN SIASSALDYL LMLFSDMDKQ LVERALEESG DDLDSAIKRL NELRLGSGDN
101: LRPVAGSSGA THESSSQVFT QGAATTNGET PSAEDLSSAK VVHLQGTEWV DLFVGEMMSA SNIDDAKARA SRALEALEKT ICARATEAAC RFQKENMMLK
201: QQLEALIQEN AIFKRAVAIQ HERQKEFEDR GNELNQLKQS VAQYQEQLRT LEVNNYALTM HLKQAQQSNN SIPGRFNPDV F

Best Arabidopsis Sequence Match ( AT5G32440.1 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.