CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90191	Canola	plastid	93.08	92.37
CDY44312	Canola	nucleus	31.92	88.3
Bra010829.1-P	Field mustard	plastid	85.77	84.79
CDX99829	Canola	plastid	76.54	79.6
CDY48340	Canola	plastid	75.0	79.27
CDX94671	Canola	plastid	71.92	74.21
AT5G32440.3	Thale cress	plastid	75.38	73.96
CDY26987	Canola	cytosol	25.77	69.79
KRH20146	Soybean	nucleus	55.77	55.34
VIT_11s0016g05730.t01	Wine grape	plastid	59.23	54.42
Solyc07g007960.2.1	Tomato	plastid	54.62	53.58
PGSC0003DMT400079410	Potato	plastid	53.85	52.63
PGSC0003DMT400007542	Potato	plastid	56.15	51.96
Solyc12g009620.1.1	Tomato	plastid	55.0	50.89
Os09t0119100-01	Rice	nucleus, plastid	45.38	43.87
CDX67941	Canola	plastid	39.23	42.15
CDY41114	Canola	nucleus, plastid	35.77	42.08
CDY70430	Canola	plastid	38.08	40.41
Os08t0313600-00	Rice	nucleus	41.92	39.49
TraesCS5B01G159800.1	Wheat	plastid	41.15	38.77
TraesCS5D01G166600.1	Wheat	nucleus	40.77	38.41
HORVU5Hr1G050690.2	Barley	plastid	40.38	38.18
TraesCS5A01G162300.2	Wheat	nucleus	40.38	38.18
CDY37566	Canola	nucleus, plastid	35.77	37.8

Protein Annotations

EnsemblPlants:CDY35306	EnsemblPlantsGene:GSBRNA2T00058267001	Gene3D:1.10.8.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:UBA-like_sf	ncoils:Coil	PANTHER:PTHR31245	PANTHER:PTHR31245:SF12	ProteinID:CDY35306	ProteinID:CDY35306.1
SEG:seg	SUPFAM:SSF46934	UniParc:UPI0004EDD86C	UniProt:A0A078HC12	MapMan:35.2	:

Description

BnaC03g59170DBnaC03g59170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HC12]

Coordinates

chrLK032349:-:389039..390096

Molecular Weight (calculated)

29024.2 Da

IEP (calculated)

4.755

GRAVY (calculated)

-0.601

Length

260 amino acids

Sequence
(BLAST)

001: MSAIVCGSKR SLFEDLSAAS SSPPVSKKLR YFSSSSPPRF PPPPAPSSLL LDHLAAIFPD MDNQILERAI EECGDDIDSA IRCLNQLRLE STNKNSEPSI
101: QEEAKVEAPQ QGKEEEVLNL DGAEWVNLFV SEMMSASDMK DAKDRAARAL EALEKSINAR AGADAAMQSS LQQENSMLRQ QLEAIVQENG LLKRAVVMQQ
201: KRQKESDDQS QELQHLRQMV TQYQEQLRTL EVNNYALTLH LKQAQQNNGS IPGRFHPDVF

Best Arabidopsis Sequence Match ( AT5G32440.3 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.