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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 1
  • cytosol 1
  • nucleus 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400079410 Potato plastid 87.92 87.59
CDY44312 Canola nucleus 23.02 64.89
Solyc12g009620.1.1 Tomato plastid 64.53 60.85
Bra030141.1-P Field mustard nucleus 41.51 57.29
VIT_11s0016g05730.t01 Wine grape plastid 60.38 56.54
CDX94671 Canola plastid 53.58 56.35
Solyc03g116780.2.1 Tomato plastid 54.34 55.38
CDY35306 Canola plastid 53.58 54.62
KRH20146 Soybean nucleus 53.96 54.58
CDX90191 Canola plastid 53.58 54.2
CDY48340 Canola plastid 50.19 54.06
Bra032320.1-P Field mustard plastid 50.19 54.06
CDX99829 Canola plastid 50.94 54.0
AT5G32440.3 Thale cress plastid 53.58 53.58
Bra010829.1-P Field mustard plastid 52.45 52.85
CDY26987 Canola cytosol 17.74 48.96
Os09t0119100-01 Rice nucleus, plastid 45.28 44.61
Os08t0313600-00 Rice nucleus 45.28 43.48
Solyc12g042750.1.1 Tomato nucleus, plastid 39.62 43.39
TraesCS5D01G166600.1 Wheat nucleus 41.89 40.22
TraesCS5B01G159800.1 Wheat plastid 41.51 39.86
HORVU5Hr1G050690.2 Barley plastid 41.13 39.64
Solyc06g068190.1.1 Tomato cytosol, nucleus, peroxisome 21.13 39.16
TraesCS5A01G162300.2 Wheat nucleus 40.38 38.91
Protein Annotations
EnsemblPlants:Solyc07g007960.2.1EnsemblPlantsGene:Solyc07g007960.2GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:CUE
InterPro:IPR003892InterPro:UBA-like_sfncoils:CoilPANTHER:PTHR31245PFAM:PF02845PFscan:PS51140
SEG:segSUPFAM:SSF46934UniParc:UPI000276B008UniProt:K4CBR5MapMan:35.2:
Description
No Description!
Coordinates
chr7:-:2649752..2657807
Molecular Weight (calculated)
29569.9 Da
IEP (calculated)
5.411
GRAVY (calculated)
-0.522
Length
265 amino acids
Sequence
(BLAST)
001: MSAVVCGKRS NFFEDLQSSP SPPVSKRIRC SPSSFSPSRS FTTPSAIDHL ISVFPDMDKQ LLERALDECG DLDSAIKRLN ELCLGSAENL GPLPGRSDAT
101: QDIGIPISTQ GNGGPTPCSS AAKELHMMER TEWVELFVRE MTSASNIDDA KARASLALEA FEKSICARAT EAATRNFQQE HVMLKQQVED LLQENNILKR
201: AFAVQHERQK EFEDRGNEVN QLKQMVAQYQ EQLRTLEVNN YALTMHLKQA QQGNSIPGRF HPDVF
Best Arabidopsis Sequence Match ( AT5G32440.1 )
(BLAST)
001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF
Arabidopsis Description
Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.