Factsheet for Solyc03g116780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001668	Potato	plastid	95.0	95.74
Solyc12g042750.1.1	Tomato	nucleus, plastid	56.54	60.74
KRH44476	Soybean	plastid	59.23	59.23
KRH09716	Soybean	nucleus, plastid	56.15	56.15
KRH23588	Soybean	nucleus, plastid	55.38	55.17
Solyc07g007960.2.1	Tomato	plastid	55.38	54.34
VIT_09s0002g07130.t01	Wine grape	nucleus, plastid	52.31	53.33
KRH47432	Soybean	plastid	53.46	53.05
Solyc12g009620.1.1	Tomato	plastid	56.54	52.31
Os09t0119100-01	Rice	nucleus, plastid	50.77	49.07
Solyc06g068190.1.1	Tomato	cytosol, nucleus, peroxisome	25.77	46.85
Os08t0313600-00	Rice	nucleus	47.69	44.93
CDY41114	Canola	nucleus, plastid	38.08	44.8
CDY37566	Canola	nucleus, plastid	42.31	44.72
Bra008498.1-P	Field mustard	nucleus, plastid	41.92	44.31
AT1G80040.1	Thale cress	nucleus, plastid	41.15	43.15
CDY70430	Canola	plastid	40.38	42.86
Bra003546.1-P	Field mustard	plastid	40.38	42.86
TraesCS5B01G159800.1	Wheat	plastid	45.0	42.39
CDX67941	Canola	plastid	39.23	42.15
HORVU5Hr1G050690.2	Barley	plastid	43.85	41.45
TraesCS5A01G162300.2	Wheat	nucleus	43.46	41.09
TraesCS5D01G166600.1	Wheat	nucleus	43.08	40.58

Protein Annotations

EnsemblPlants:Solyc03g116780.2.1	EnsemblPlantsGene:Solyc03g116780.2	Gene3D:1.10.8.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:CUE	InterPro:IPR003892	InterPro:UBA-like_sf	ncoils:Coil	PANTHER:PTHR31245	PANTHER:PTHR31245:SF12
PFAM:PF02845	PFscan:PS51140	SEG:seg	SUPFAM:SSF46934	UniParc:UPI00027690FC	UniProt:K4BLI0
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:66057696..66061261

Molecular Weight (calculated)

29160.4 Da

IEP (calculated)

5.216

GRAVY (calculated)

-0.582

Length

260 amino acids

Sequence
(BLAST)

001: MSAIVCGKRS FFEDLQSPSP TSASPPVSKK IRCSSSTSPV RFPTSLIDQL RTLFPDMDNQ VVEKALEESG NDLDAAIKRL HELHLVYGDA KTVADGEMDN
101: GEKPTNGPDV QSEGPPLQNN LPADGAEWVE LLVREMMSAT SVDDARARAT RVLESLERSI SVHAGAAAAE NVHKENVMLK EQIEVFLREK AIFKRAIAIQ
201: HERQKEYDDR NQEVQQLKQM IAQYQEQIKN LEVNNYALTM HLHQAQQNNS IPGRFHPDIF

Best Arabidopsis Sequence Match ( AT5G32440.1 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.