Factsheet for HORVU5Hr1G050690.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G159800.1	Wheat	plastid	92.0	91.67
TraesCS5A01G162300.2	Wheat	nucleus	90.55	90.55
TraesCS5D01G166600.1	Wheat	nucleus	85.82	85.51
Os09t0119100-01	Rice	nucleus, plastid	62.55	63.94
CDY44312	Canola	nucleus	16.36	47.87
VIT_11s0016g05730.t01	Wine grape	plastid	46.91	45.58
PGSC0003DMT400073448	Potato	plastid	43.27	45.25
HORVU6Hr1G028290.2	Barley	cytosol	28.73	44.89
PGSC0003DMT400001668	Potato	plastid	41.82	44.57
Solyc03g116780.2.1	Tomato	plastid	41.45	43.85
HORVU4Hr1G065880.1	Barley	cytosol	12.0	43.42
Bra030141.1-P	Field mustard	nucleus	29.45	42.19
VIT_09s0002g07130.t01	Wine grape	nucleus, plastid	38.91	41.96
PGSC0003DMT400079410	Potato	plastid	40.0	41.35
Solyc12g042750.1.1	Tomato	nucleus, plastid	36.36	41.32
Solyc07g007960.2.1	Tomato	plastid	39.64	41.13
KRH20146	Soybean	nucleus	38.91	40.84
CDX94671	Canola	plastid	37.09	40.48
CDY35306	Canola	plastid	38.18	40.38
KRH44476	Soybean	plastid	38.18	40.38
KRH23588	Soybean	nucleus, plastid	38.18	40.23
Solyc12g009620.1.1	Tomato	plastid	41.09	40.21
AT5G32440.3	Thale cress	plastid	38.55	40.0
CDX99829	Canola	plastid	36.36	40.0
KRH09716	Soybean	nucleus, plastid	37.82	40.0
PGSC0003DMT400007542	Potato	plastid	40.73	39.86
CDY41114	Canola	nucleus, plastid	32.0	39.82
PGSC0003DMT400073696	Potato	nucleus	36.73	39.76
CDY26987	Canola	cytosol	13.82	39.58
Bra010829.1-P	Field mustard	plastid	37.82	39.54
Bra032320.1-P	Field mustard	plastid	35.27	39.43
CDY48340	Canola	plastid	35.27	39.43
CDX90191	Canola	plastid	36.73	38.55
HORVU0Hr1G022500.1	Barley	nucleus, plastid	38.91	38.49
CDX67941	Canola	plastid	32.73	37.19
AT1G80040.1	Thale cress	nucleus, plastid	33.45	37.1
Solyc06g068190.1.1	Tomato	cytosol, nucleus, peroxisome	19.27	37.06
CDY70430	Canola	plastid	32.73	36.73
Bra003546.1-P	Field mustard	plastid	32.73	36.73
KRH47432	Soybean	plastid	34.55	36.26
CDY37566	Canola	nucleus, plastid	32.36	36.18
Bra008498.1-P	Field mustard	nucleus, plastid	32.0	35.77
HORVU6Hr1G030160.1	Barley	cytosol	21.82	35.09
HORVU0Hr1G022480.3	Barley	cytosol	22.91	28.38
HORVU0Hr1G022570.1	Barley	nucleus	26.91	23.87

Protein Annotations

EnsemblPlants:HORVU5Hr1G050690.2	EnsemblPlantsGene:HORVU5Hr1G050690	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:CUE
InterPro:IPR003892	InterPro:UBA-like_sf	ncoils:Coil	PANTHER:PTHR31245	PANTHER:PTHR31245:SF3	PFAM:PF02845
SEG:seg	SUPFAM:SSF46934	UniParc:UPI00029588B0	UniProt:M0XA17	MapMan:35.2	:

Description

No Description!

Coordinates

chrchr5H:-:394631438..394638615

Molecular Weight (calculated)

31056.6 Da

IEP (calculated)

5.845

GRAVY (calculated)

-0.637

Length

275 amino acids

Sequence
(BLAST)

001: MSASMCRKRA SSFSEEHTHA EASSSPPSKR ARFRADGGSP RPRGVVDSDL VAVIRARFPS VRLEFIEKAL EECENDLDSA MKYLLPLHLE PTGYNVDPVH
101: QSPNEMSTEV QVPNEGIAEC NEVPAPVGSV LGAENLQSGI TQWVEILMNE MASASNSDDA KARASIVLEA YEKSTSSCIR TEAMQKYQKD FLLYKEQFEA
201: VNKENTILKK AVAIQHERQK EHDERNQELQ QLKQLVMQYR EQIRSLEINN YALSMHLRQS QQGNSIPGHF HRDIL

Best Arabidopsis Sequence Match ( AT5G32440.1 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.