CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09716	Soybean	nucleus, plastid	93.87	94.23
KRH44476	Soybean	plastid	71.65	71.92
KRH47432	Soybean	plastid	66.67	66.41
PGSC0003DMT400001668	Potato	plastid	54.79	55.43
Solyc03g116780.2.1	Tomato	plastid	55.17	55.38
KRH20146	Soybean	nucleus	52.87	52.67
PGSC0003DMT400073448	Potato	plastid	52.11	51.71
PGSC0003DMT400073696	Potato	nucleus	49.81	51.18
Solyc12g042750.1.1	Tomato	nucleus, plastid	44.44	47.93
VIT_09s0002g07130.t01	Wine grape	nucleus, plastid	46.74	47.84
Os09t0119100-01	Rice	nucleus, plastid	47.89	46.47
CDY41114	Canola	nucleus, plastid	36.4	42.99
CDY70430	Canola	plastid	40.23	42.86
Bra003546.1-P	Field mustard	plastid	39.08	41.63
AT1G80040.1	Thale cress	nucleus, plastid	39.46	41.53
CDX67941	Canola	plastid	38.31	41.32
CDY37566	Canola	nucleus, plastid	38.7	41.06
Bra008498.1-P	Field mustard	nucleus, plastid	38.7	41.06
Os08t0313600-00	Rice	nucleus	42.91	40.58
TraesCS5B01G159800.1	Wheat	plastid	42.15	39.86
TraesCS5A01G162300.2	Wheat	nucleus	41.0	38.91
HORVU5Hr1G050690.2	Barley	plastid	40.23	38.18
TraesCS5D01G166600.1	Wheat	nucleus	39.85	37.68
Solyc06g068190.1.1	Tomato	cytosol, nucleus, peroxisome	18.77	34.27

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100788683	MapMan:35.2	EMBL:ACUP02008474	EMBL:BT093934	UniProt:C6T8X7
InterPro:CUE	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G366200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003892	EnsemblPlants:KRH23588	ProteinID:KRH23588	ProteinID:KRH23588.1	PFAM:PF02845	PFscan:PS51140
PANTHER:PTHR31245	PANTHER:PTHR31245:SF12	SUPFAM:SSF46934	InterPro:UBA-like_sf	UniParc:UPI0001B1639E	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:45211924..45215104

Molecular Weight (calculated)

28826.0 Da

IEP (calculated)

5.017

GRAVY (calculated)

-0.433

Length

261 amino acids

Sequence
(BLAST)

001: MSAAVCGSKR SLFEELPPSP PVSKRLRCSS SPIRLSLPSL IDHLRPLFPH MDDQVLERAL QECGNDLDAA IKSLHGLCLG SADDNSQPAP QPDHPNLVVD
101: TGALEENGDA SASGDQPAAA NFPAGGAEWI DLFVREMTCA TSVDDARSRA ARLLEVLEKS ITAHASSGVT TALQRENLML KEHIEALTKE KNCFKSAFRI
201: QLERLSDYEN RNQELQQLKQ LVSQYQEQIR TLEVNNYALR MHLNQAQQYS PFPGCFPPDA F

Best Arabidopsis Sequence Match ( AT5G32440.3 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.