Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37566 | Canola | nucleus, plastid | 99.19 | 99.19 |
| Bra003546.1-P | Field mustard | plastid | 69.92 | 70.2 |
| AT1G80040.1 | Thale cress | nucleus, plastid | 70.33 | 69.76 |
| PGSC0003DMT400073696 | Potato | nucleus | 43.5 | 42.13 |
| Solyc03g116780.2.1 | Tomato | plastid | 44.31 | 41.92 |
| PGSC0003DMT400001668 | Potato | plastid | 43.9 | 41.86 |
| Solyc12g042750.1.1 | Tomato | nucleus, plastid | 40.65 | 41.32 |
| VIT_09s0002g07130.t01 | Wine grape | nucleus, plastid | 42.68 | 41.18 |
| PGSC0003DMT400073448 | Potato | plastid | 43.9 | 41.06 |
| KRH09716 | Soybean | nucleus, plastid | 43.09 | 40.77 |
| KRH44476 | Soybean | plastid | 42.68 | 40.38 |
| Bra032320.1-P | Field mustard | plastid | 39.02 | 39.02 |
| KRH23588 | Soybean | nucleus, plastid | 41.06 | 38.7 |
| KRH47432 | Soybean | plastid | 39.43 | 37.02 |
| Bra030141.1-P | Field mustard | nucleus | 28.86 | 36.98 |
| Bra010829.1-P | Field mustard | plastid | 39.02 | 36.5 |
| Os09t0119100-01 | Rice | nucleus, plastid | 38.21 | 34.94 |
| Os08t0313600-00 | Rice | nucleus | 38.62 | 34.42 |
| TraesCS5D01G166600.1 | Wheat | nucleus | 37.4 | 33.33 |
| TraesCS5B01G159800.1 | Wheat | plastid | 36.59 | 32.61 |
| TraesCS5A01G162300.2 | Wheat | nucleus | 36.18 | 32.36 |
| HORVU5Hr1G050690.2 | Barley | plastid | 35.77 | 32.0 |
| Solyc06g068190.1.1 | Tomato | cytosol, nucleus, peroxisome | 17.89 | 30.77 |
Protein Annotations
Description
AT1G80040 (E=1e-078) | unknown protein
Coordinates
chrA02:+:15988693..15989918
Molecular Weight (calculated)
27745.5 Da
IEP (calculated)
5.405
GRAVY (calculated)
-0.649
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAVYCGSKR SYFEDIPSPP SSKRFRCYSP SDSPIWSSPP SSSLDQLRTA FPHLELTVLV KALEEHGNDL CAATRSLHSE EKKAEELANM ESHAVAGGTF
101: TADSDNHPAS GDDWVGLLIR EVTQSTGIDD AKVRAAKVLQ SLEQTLSSRA REEARKIFQE EKVAVQQQVE DLMKDNTVLK RAVAIQHERH KAFEDANQQL
201: ELLKQVIPQY QEKIRNLEMN NYALNLRLQQ AEQGNSMLER FNPDVY
101: TADSDNHPAS GDDWVGLLIR EVTQSTGIDD AKVRAAKVLQ SLEQTLSSRA REEARKIFQE EKVAVQQQVE DLMKDNTVLK RAVAIQHERH KAFEDANQQL
201: ELLKQVIPQY QEKIRNLEMN NYALNLRLQQ AEQGNSMLER FNPDVY
001: MSAVYCGTKR SYFDDNSSPP SSKRFRCFSP SNSPIWSSPP SSSLDQLHSA FPHIELTVLV KALEDNGSDF NAAMKSLYSF ASSEEKKAEE LAAGGAATQE
101: TDAVCGGNPP TSGDDWVELL VREVLQSSGT DDAKVRAARV LEALEKMLSA RAREEAGNKF QEEKVAVQQQ VETLVKDNTV LKRAVAIQHE RQKALEDANH
201: QLGLLKQLVP QYQEKLRNLE VNNYALRMQL QQVEHGNSMP ARFNPDVF
101: TDAVCGGNPP TSGDDWVELL VREVLQSSGT DDAKVRAARV LEALEKMLSA RAREEAGNKF QEEKVAVQQQ VETLVKDNTV LKRAVAIQHE RQKALEDANH
201: QLGLLKQLVP QYQEKLRNLE VNNYALRMQL QQVEHGNSMP ARFNPDVF
Arabidopsis Description
F18B13.13 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSD3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.