Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44312 | Canola | nucleus | 47.92 | 97.87 |
| Bra032320.1-P | Field mustard | plastid | 76.04 | 59.35 |
| Bra010829.1-P | Field mustard | plastid | 77.6 | 56.65 |
| AT5G32440.3 | Thale cress | plastid | 77.6 | 56.23 |
| KRH20146 | Soybean | nucleus | 59.9 | 43.89 |
| VIT_11s0016g05730.t01 | Wine grape | plastid | 63.02 | 42.76 |
| PGSC0003DMT400079410 | Potato | plastid | 58.33 | 42.11 |
| Solyc07g007960.2.1 | Tomato | plastid | 57.29 | 41.51 |
| PGSC0003DMT400007542 | Potato | plastid | 59.38 | 40.57 |
| Solyc12g009620.1.1 | Tomato | plastid | 58.33 | 39.86 |
| Os09t0119100-01 | Rice | nucleus, plastid | 45.83 | 32.71 |
| Bra003546.1-P | Field mustard | plastid | 39.58 | 31.02 |
| Os08t0313600-00 | Rice | nucleus | 44.27 | 30.8 |
| TraesCS5D01G166600.1 | Wheat | nucleus | 44.27 | 30.8 |
| TraesCS5A01G162300.2 | Wheat | nucleus | 43.75 | 30.55 |
| TraesCS5B01G159800.1 | Wheat | plastid | 43.75 | 30.43 |
| HORVU5Hr1G050690.2 | Barley | plastid | 42.19 | 29.45 |
| Bra008498.1-P | Field mustard | nucleus, plastid | 36.98 | 28.86 |
Protein Annotations
Description
AT5G32440 (E=3e-062) | LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80040.1); Has 303 Blast hits to 289 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 74; Fungi - 21; Plants - 93; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).
Coordinates
chrA07:-:6245298..6245960
Molecular Weight (calculated)
21927.7 Da
IEP (calculated)
4.539
GRAVY (calculated)
-0.807
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYQILERAI EECGEDLDSA IRSLNQLRLE STNQNPEEAK VEGSEKEQVL NLDGTEWVEL FVREMMSASD MNDAKDRASR ALQALDKSIK ARAGADAAMQ
101: SSLQQENSML KQQLEATVQE NSLLKRAVVT QQKRQRETED ESQELQGLRR MVSQYQEQLR TLEVNNYALT LHLKQALQNN SSIPGRFHPD VF
101: SSLQQENSML KQQLEATVQE NSLLKRAVVT QQKRQRETED ESQELQGLRR MVSQYQEQLR TLEVNNYALT LHLKQALQNN SSIPGRFHPD VF
001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF
Arabidopsis Description
Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.